A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
40.4
nTPM
Monaco:
59.1
nTPM
Schmiedel:
45.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.4
HPA sample
nTPM
Classical monocyte nTPM: 28.4
Samples: 6
Max nTPM: 43.9
Min nTPM: 18.9
P10809_1003
18.9
P10809_1020
35.1
P10809_1039
43.9
P10809_1058
21.9
P10809_1080
24.7
P10809_1107
25.7
Intermediate monocyte nTPM: 40.4
Samples: 6
Max nTPM: 59.4
Min nTPM: 24.8
P10809_1004
24.8
P10809_1023
47.1
P10809_1042
40.8
P10809_1061
59.4
P10809_1081
30.6
P10809_1108
39.6
Non-classical monocyte nTPM: 28.4
Samples: 5
Max nTPM: 33.6
Min nTPM: 22.4
P10809_1005
22.4
P10809_1053
33.6
P10809_1072
25.3
P10809_1082
30.0
P10809_1109
30.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.1
Monaco sample
nTPM
Classical monocyte nTPM: 55.4
Samples: 4
Max nTPM: 63.0
Min nTPM: 44.6
RHH5313_R3680
63.0
RHH5221_R3593
60.0
RHH5250_R3622
54.0
RHH5279_R3651
44.6
Intermediate monocyte nTPM: 59.1
Samples: 4
Max nTPM: 68.6
Min nTPM: 49.4
RHH5314_R3681
50.3
RHH5222_R3594
49.4
RHH5251_R3623
68.2
RHH5280_R3652
68.6
Non-classical monocyte nTPM: 52.7
Samples: 4
Max nTPM: 59.9
Min nTPM: 44.7
RHH5315_R3682
59.9
RHH5223_R3595
44.7
RHH5252_R3624
55.4
RHH5281_R3653
50.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.2
Schmiedel sample id
TPM
Classical monocyte TPM: 38.4
Samples: 91
Max TPM: 48.5
Min TPM: 31.1
MONOCYTES_1
48.5
MONOCYTES_2
46.5
MONOCYTES_3
46.3
MONOCYTES_4
46.1
MONOCYTES_5
45.4
MONOCYTES_6
45.0
MONOCYTES_7
44.7
MONOCYTES_8
43.9
MONOCYTES_9
43.7
MONOCYTES_10
43.6
MONOCYTES_11
43.2
MONOCYTES_12
43.1
MONOCYTES_13
42.9
MONOCYTES_14
42.7
MONOCYTES_15
42.3
MONOCYTES_16
42.3
MONOCYTES_17
42.1
MONOCYTES_18
41.5
MONOCYTES_19
41.3
MONOCYTES_20
41.2
MONOCYTES_21
41.1
MONOCYTES_22
41.1
MONOCYTES_23
41.1
MONOCYTES_24
40.5
MONOCYTES_25
40.5
MONOCYTES_26
40.4
MONOCYTES_27
40.4
MONOCYTES_28
40.3
MONOCYTES_29
40.2
MONOCYTES_30
39.5
MONOCYTES_31
39.5
MONOCYTES_32
39.4
MONOCYTES_33
39.3
MONOCYTES_34
39.2
MONOCYTES_35
39.1
MONOCYTES_36
39.1
MONOCYTES_37
39.0
MONOCYTES_38
39.0
MONOCYTES_39
38.8
MONOCYTES_40
38.6
MONOCYTES_41
38.6
MONOCYTES_42
38.6
MONOCYTES_43
38.5
MONOCYTES_44
38.3
MONOCYTES_45
38.3
MONOCYTES_46
38.2
MONOCYTES_47
38.1
MONOCYTES_48
38.0
MONOCYTES_49
38.0
MONOCYTES_50
37.7
MONOCYTES_51
37.6
MONOCYTES_52
37.5
MONOCYTES_53
37.3
MONOCYTES_54
37.2
MONOCYTES_55
37.1
MONOCYTES_56
36.9
MONOCYTES_57
36.9
MONOCYTES_58
36.9
MONOCYTES_59
36.7
MONOCYTES_60
36.5
MONOCYTES_61
36.4
MONOCYTES_62
36.4
MONOCYTES_63
36.3
MONOCYTES_64
36.2
MONOCYTES_65
36.0
MONOCYTES_66
35.9
MONOCYTES_67
35.9
MONOCYTES_68
35.9
MONOCYTES_69
35.9
MONOCYTES_70
35.6
MONOCYTES_71
35.6
MONOCYTES_72
35.3
MONOCYTES_73
35.2
MONOCYTES_74
35.0
MONOCYTES_75
35.0
MONOCYTES_76
34.8
MONOCYTES_77
34.7
MONOCYTES_78
34.6
MONOCYTES_79
34.6
MONOCYTES_80
34.6
MONOCYTES_81
34.3
MONOCYTES_82
33.9
MONOCYTES_83
33.9
MONOCYTES_84
33.9
MONOCYTES_85
33.8
MONOCYTES_86
33.6
MONOCYTES_87
32.6
MONOCYTES_88
32.4
MONOCYTES_89
32.2
MONOCYTES_90
31.7
MONOCYTES_91
31.1
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Non-classical monocyte TPM: 45.2
Samples: 90
Max TPM: 56.7
Min TPM: 33.2
M2_1
56.7
M2_2
55.9
M2_3
53.9
M2_4
53.9
M2_5
53.8
M2_6
53.2
M2_7
51.0
M2_8
50.8
M2_9
50.8
M2_10
50.8
M2_11
50.6
M2_12
50.4
M2_13
50.3
M2_14
50.1
M2_15
49.8
M2_16
49.3
M2_17
49.2
M2_18
49.0
M2_19
48.8
M2_20
48.8
M2_21
48.5
M2_22
48.0
M2_23
47.8
M2_24
47.7
M2_25
47.7
M2_26
47.7
M2_27
47.5
M2_28
47.3
M2_29
47.3
M2_30
47.3
M2_31
46.7
M2_32
46.7
M2_33
46.7
M2_34
46.6
M2_35
46.4
M2_36
46.3
M2_37
46.2
M2_38
46.1
M2_39
45.8
M2_40
45.8
M2_41
45.8
M2_42
45.5
M2_43
45.2
M2_44
45.2
M2_45
45.1
M2_46
45.1
M2_47
45.1
M2_48
45.0
M2_49
44.8
M2_50
44.8
M2_51
44.7
M2_52
44.7
M2_53
44.7
M2_54
44.6
M2_55
44.2
M2_56
43.9
M2_57
43.6
M2_58
43.5
M2_59
43.4
M2_60
43.0
M2_61
42.9
M2_62
42.8
M2_63
42.7
M2_64
42.7
M2_65
42.6
M2_66
42.5
M2_67
42.3
M2_68
42.3
M2_69
41.9
M2_70
41.7
M2_71
41.6
M2_72
41.6
M2_73
40.8
M2_74
40.8
M2_75
40.8
M2_76
40.5
M2_77
40.5
M2_78
40.4
M2_79
40.3
M2_80
40.1
M2_81
40.0
M2_82
39.9
M2_83
39.5
M2_84
39.5
M2_85
39.0
M2_86
37.5
M2_87
37.4
M2_88
35.9
M2_89
35.4
M2_90
33.2
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