A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.3
nTPM
Monaco:
65.5
nTPM
Schmiedel:
53.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.3
HPA sample
nTPM
Memory B-cell nTPM: 15.3
Samples: 6
Max nTPM: 19.3
Min nTPM: 9.7
P10809_1017
17.4
P10809_1025
19.3
P10809_1044
9.7
P10809_1063
14.0
P10809_1092
16.6
P10809_1105
14.9
Naive B-cell nTPM: 12.3
Samples: 6
Max nTPM: 16.4
Min nTPM: 8.8
P10809_1011
11.4
P10809_1029
8.8
P10809_1048
16.4
P10809_1067
12.4
P10809_1091
11.9
P10809_1104
13.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 58.4
Samples: 4
Max nTPM: 62.9
Min nTPM: 49.1
RHH5310_R3677
62.9
RHH5218_R3590
59.7
RHH5247_R3619
49.1
RHH5276_R3648
62.0
Naive B-cell nTPM: 48.1
Samples: 4
Max nTPM: 52.0
Min nTPM: 41.5
RHH5308_R3675
48.0
RHH5216_R3588
41.5
RHH5245_R3617
50.7
RHH5274_R3646
52.0
Non-switched memory B-cell nTPM: 50.1
Samples: 4
Max nTPM: 59.9
Min nTPM: 38.0
RHH5309_R3676
51.4
RHH5217_R3589
59.9
RHH5246_R3618
38.0
RHH5275_R3647
51.0
Plasmablast nTPM: 57.2
Samples: 4
Max nTPM: 60.5
Min nTPM: 52.5
RHH5312_R3679
60.5
RHH5220_R3592
56.0
RHH5249_R3621
59.7
RHH5278_R3650
52.5
Switched memory B-cell nTPM: 65.5
Samples: 4
Max nTPM: 88.1
Min nTPM: 54.1
RHH5311_R3678
55.6
RHH5219_R3591
54.1
RHH5248_R3620
88.1
RHH5277_R3649
64.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.0
Schmiedel sample id
TPM
Naive B-cell TPM: 53.0
Samples: 91
Max TPM: 87.4
Min TPM: 37.1
B_CELL_NAIVE_1
87.4
B_CELL_NAIVE_2
82.6
B_CELL_NAIVE_3
80.2
B_CELL_NAIVE_4
79.4
B_CELL_NAIVE_5
76.5
B_CELL_NAIVE_6
74.0
B_CELL_NAIVE_7
69.9
B_CELL_NAIVE_8
68.1
B_CELL_NAIVE_9
64.2
B_CELL_NAIVE_10
64.2
B_CELL_NAIVE_11
63.4
B_CELL_NAIVE_12
61.4
B_CELL_NAIVE_13
61.3
B_CELL_NAIVE_14
59.8
B_CELL_NAIVE_15
59.8
B_CELL_NAIVE_16
59.3
B_CELL_NAIVE_17
59.2
B_CELL_NAIVE_18
58.9
B_CELL_NAIVE_19
58.9
B_CELL_NAIVE_20
58.5
B_CELL_NAIVE_21
58.0
B_CELL_NAIVE_22
57.8
B_CELL_NAIVE_23
57.7
B_CELL_NAIVE_24
57.5
B_CELL_NAIVE_25
56.0
B_CELL_NAIVE_26
54.9
B_CELL_NAIVE_27
54.4
B_CELL_NAIVE_28
53.9
B_CELL_NAIVE_29
53.5
B_CELL_NAIVE_30
53.4
B_CELL_NAIVE_31
53.4
B_CELL_NAIVE_32
53.4
B_CELL_NAIVE_33
53.2
B_CELL_NAIVE_34
52.9
B_CELL_NAIVE_35
52.7
B_CELL_NAIVE_36
52.7
B_CELL_NAIVE_37
52.6
B_CELL_NAIVE_38
52.5
B_CELL_NAIVE_39
51.5
B_CELL_NAIVE_40
51.5
B_CELL_NAIVE_41
51.5
B_CELL_NAIVE_42
51.4
B_CELL_NAIVE_43
51.3
B_CELL_NAIVE_44
51.1
B_CELL_NAIVE_45
50.7
B_CELL_NAIVE_46
50.7
B_CELL_NAIVE_47
50.6
B_CELL_NAIVE_48
50.5
B_CELL_NAIVE_49
50.1
B_CELL_NAIVE_50
49.9
B_CELL_NAIVE_51
49.7
B_CELL_NAIVE_52
49.6
B_CELL_NAIVE_53
49.6
B_CELL_NAIVE_54
49.6
B_CELL_NAIVE_55
49.5
B_CELL_NAIVE_56
49.2
B_CELL_NAIVE_57
49.1
B_CELL_NAIVE_58
48.9
B_CELL_NAIVE_59
48.9
B_CELL_NAIVE_60
48.9
B_CELL_NAIVE_61
48.8
B_CELL_NAIVE_62
48.4
B_CELL_NAIVE_63
48.2
B_CELL_NAIVE_64
48.0
B_CELL_NAIVE_65
47.5
B_CELL_NAIVE_66
47.3
B_CELL_NAIVE_67
47.3
B_CELL_NAIVE_68
47.1
B_CELL_NAIVE_69
47.1
B_CELL_NAIVE_70
46.7
B_CELL_NAIVE_71
46.7
B_CELL_NAIVE_72
46.3
B_CELL_NAIVE_73
46.3
B_CELL_NAIVE_74
46.0
B_CELL_NAIVE_75
46.0
B_CELL_NAIVE_76
45.7
B_CELL_NAIVE_77
45.6
B_CELL_NAIVE_78
45.6
B_CELL_NAIVE_79
45.6
B_CELL_NAIVE_80
44.7
B_CELL_NAIVE_81
44.6
B_CELL_NAIVE_82
44.6
B_CELL_NAIVE_83
44.4
B_CELL_NAIVE_84
44.1
B_CELL_NAIVE_85
43.2
B_CELL_NAIVE_86
42.8
B_CELL_NAIVE_87
41.8
B_CELL_NAIVE_88
39.3
B_CELL_NAIVE_89
39.2
B_CELL_NAIVE_90
39.1
B_CELL_NAIVE_91
37.1
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The Human Protein Atlas project is funded
