A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.8
nTPM
Monaco:
151.2
nTPM
Schmiedel:
106.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.8
HPA sample
nTPM
Classical monocyte nTPM: 22.8
Samples: 6
Max nTPM: 26.0
Min nTPM: 19.4
P10809_1003
22.0
P10809_1020
24.3
P10809_1039
19.4
P10809_1058
22.5
P10809_1080
26.0
P10809_1107
22.6
Intermediate monocyte nTPM: 29.9
Samples: 6
Max nTPM: 53.0
Min nTPM: 23.1
P10809_1004
23.1
P10809_1023
23.1
P10809_1042
29.0
P10809_1061
53.0
P10809_1081
25.4
P10809_1108
25.8
Non-classical monocyte nTPM: 33.8
Samples: 5
Max nTPM: 43.8
Min nTPM: 29.1
P10809_1005
29.1
P10809_1053
34.3
P10809_1072
43.8
P10809_1082
31.9
P10809_1109
29.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.2
Monaco sample
nTPM
Classical monocyte nTPM: 93.9
Samples: 4
Max nTPM: 100.8
Min nTPM: 89.4
RHH5313_R3680
94.2
RHH5221_R3593
89.4
RHH5250_R3622
100.8
RHH5279_R3651
91.0
Intermediate monocyte nTPM: 117.1
Samples: 4
Max nTPM: 137.8
Min nTPM: 101.6
RHH5314_R3681
101.6
RHH5222_R3594
106.9
RHH5251_R3623
122.2
RHH5280_R3652
137.8
Non-classical monocyte nTPM: 151.2
Samples: 4
Max nTPM: 159.9
Min nTPM: 139.8
RHH5315_R3682
158.9
RHH5223_R3595
139.8
RHH5252_R3624
146.3
RHH5281_R3653
159.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
106.3
Schmiedel sample id
TPM
Classical monocyte TPM: 53.2
Samples: 91
Max TPM: 84.5
Min TPM: 35.0
MONOCYTES_1
84.5
MONOCYTES_2
77.6
MONOCYTES_3
76.2
MONOCYTES_4
76.2
MONOCYTES_5
71.7
MONOCYTES_6
70.5
MONOCYTES_7
69.4
MONOCYTES_8
68.0
MONOCYTES_9
67.3
MONOCYTES_10
67.3
MONOCYTES_11
66.4
MONOCYTES_12
65.4
MONOCYTES_13
64.9
MONOCYTES_14
63.8
MONOCYTES_15
63.7
MONOCYTES_16
63.5
MONOCYTES_17
62.3
MONOCYTES_18
61.9
MONOCYTES_19
60.8
MONOCYTES_20
60.4
MONOCYTES_21
60.0
MONOCYTES_22
59.7
MONOCYTES_23
59.1
MONOCYTES_24
58.6
MONOCYTES_25
58.3
MONOCYTES_26
58.1
MONOCYTES_27
57.8
MONOCYTES_28
57.8
MONOCYTES_29
57.3
MONOCYTES_30
57.2
MONOCYTES_31
57.1
MONOCYTES_32
56.9
MONOCYTES_33
56.3
MONOCYTES_34
55.9
MONOCYTES_35
55.5
MONOCYTES_36
55.1
MONOCYTES_37
55.1
MONOCYTES_38
54.5
MONOCYTES_39
54.5
MONOCYTES_40
54.2
MONOCYTES_41
53.9
MONOCYTES_42
53.7
MONOCYTES_43
53.4
MONOCYTES_44
52.8
MONOCYTES_45
52.4
MONOCYTES_46
52.3
MONOCYTES_47
52.0
MONOCYTES_48
51.9
MONOCYTES_49
51.6
MONOCYTES_50
51.4
MONOCYTES_51
51.2
MONOCYTES_52
50.4
MONOCYTES_53
50.2
MONOCYTES_54
50.1
MONOCYTES_55
49.6
MONOCYTES_56
49.2
MONOCYTES_57
48.8
MONOCYTES_58
48.7
MONOCYTES_59
48.4
MONOCYTES_60
48.3
MONOCYTES_61
47.7
MONOCYTES_62
47.4
MONOCYTES_63
47.4
MONOCYTES_64
47.3
MONOCYTES_65
46.8
MONOCYTES_66
46.7
MONOCYTES_67
46.0
MONOCYTES_68
45.7
MONOCYTES_69
45.6
MONOCYTES_70
44.7
MONOCYTES_71
44.5
MONOCYTES_72
44.0
MONOCYTES_73
43.9
MONOCYTES_74
43.7
MONOCYTES_75
43.7
MONOCYTES_76
43.5
MONOCYTES_77
42.6
MONOCYTES_78
42.4
MONOCYTES_79
42.0
MONOCYTES_80
41.6
MONOCYTES_81
41.2
MONOCYTES_82
40.5
MONOCYTES_83
40.1
MONOCYTES_84
39.7
MONOCYTES_85
39.4
MONOCYTES_86
39.1
MONOCYTES_87
37.9
MONOCYTES_88
37.6
MONOCYTES_89
35.8
MONOCYTES_90
35.3
MONOCYTES_91
35.0
Show allShow less
Non-classical monocyte TPM: 106.3
Samples: 90
Max TPM: 163.6
Min TPM: 76.3
M2_1
163.6
M2_2
155.5
M2_3
150.8
M2_4
147.1
M2_5
145.9
M2_6
144.5
M2_7
144.4
M2_8
143.6
M2_9
141.5
M2_10
131.9
M2_11
131.6
M2_12
130.8
M2_13
130.4
M2_14
129.4
M2_15
127.3
M2_16
127.1
M2_17
126.3
M2_18
124.4
M2_19
122.2
M2_20
119.5
M2_21
119.3
M2_22
117.5
M2_23
117.2
M2_24
115.8
M2_25
115.5
M2_26
114.5
M2_27
114.4
M2_28
114.2
M2_29
114.1
M2_30
114.1
M2_31
109.9
M2_32
109.8
M2_33
108.9
M2_34
107.5
M2_35
107.0
M2_36
106.9
M2_37
106.8
M2_38
106.3
M2_39
105.6
M2_40
104.2
M2_41
103.6
M2_42
102.7
M2_43
102.3
M2_44
101.0
M2_45
100.9
M2_46
100.9
M2_47
100.6
M2_48
100.5
M2_49
100.3
M2_50
99.2
M2_51
99.2
M2_52
99.0
M2_53
98.5
M2_54
98.3
M2_55
98.1
M2_56
97.8
M2_57
96.9
M2_58
96.4
M2_59
95.9
M2_60
95.5
M2_61
95.0
M2_62
95.0
M2_63
94.2
M2_64
93.4
M2_65
92.8
M2_66
92.5
M2_67
92.4
M2_68
92.4
M2_69
92.2
M2_70
91.7
M2_71
91.3
M2_72
89.0
M2_73
88.0
M2_74
87.3
M2_75
86.6
M2_76
85.5
M2_77
85.4
M2_78
85.0
M2_79
84.9
M2_80
84.7
M2_81
84.4
M2_82
84.2
M2_83
83.9
M2_84
83.5
M2_85
82.5
M2_86
82.1
M2_87
79.9
M2_88
79.6
M2_89
79.1
M2_90
76.3
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
