A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.6
nTPM
Monaco:
82.2
nTPM
Schmiedel:
77.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.6
HPA sample
nTPM
NK-cell nTPM: 23.6
Samples: 6
Max nTPM: 36.0
Min nTPM: 13.9
P10809_1013
36.0
P10809_1033
27.9
P10809_1052
21.4
P10809_1071
15.6
P10809_1093
13.9
P10809_1103
26.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.2
Monaco sample
nTPM
NK-cell nTPM: 82.3
Samples: 4
Max nTPM: 92.0
Min nTPM: 66.3
RHH5316_R3683
66.3
RHH5224_R3596
81.2
RHH5253_R3625
89.5
RHH5282_R3654
92.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.6
Schmiedel sample id
TPM
NK-cell TPM: 77.6
Samples: 90
Max TPM: 153.1
Min TPM: 48.6
NK_1
153.1
NK_2
142.1
NK_3
110.2
NK_4
108.0
NK_5
106.7
NK_6
105.4
NK_7
104.8
NK_8
101.3
NK_9
100.6
NK_10
98.9
NK_11
98.6
NK_12
98.3
NK_13
96.7
NK_14
96.1
NK_15
95.8
NK_16
91.2
NK_17
90.3
NK_18
89.9
NK_19
89.6
NK_20
88.7
NK_21
87.9
NK_22
87.2
NK_23
86.6
NK_24
84.3
NK_25
84.1
NK_26
83.6
NK_27
83.4
NK_28
82.8
NK_29
82.7
NK_30
81.9
NK_31
81.5
NK_32
81.1
NK_33
81.1
NK_34
80.9
NK_35
79.8
NK_36
79.2
NK_37
78.5
NK_38
78.4
NK_39
77.5
NK_40
77.5
NK_41
77.4
NK_42
77.0
NK_43
75.9
NK_44
75.8
NK_45
75.2
NK_46
73.9
NK_47
73.2
NK_48
72.9
NK_49
72.4
NK_50
72.3
NK_51
71.9
NK_52
71.9
NK_53
71.0
NK_54
70.8
NK_55
70.4
NK_56
69.2
NK_57
68.7
NK_58
68.2
NK_59
68.2
NK_60
67.9
NK_61
67.8
NK_62
67.1
NK_63
66.5
NK_64
66.4
NK_65
66.0
NK_66
66.0
NK_67
65.3
NK_68
65.0
NK_69
64.8
NK_70
64.5
NK_71
64.3
NK_72
64.3
NK_73
62.9
NK_74
62.3
NK_75
61.8
NK_76
61.4
NK_77
60.4
NK_78
60.3
NK_79
60.3
NK_80
60.3
NK_81
59.4
NK_82
59.0
NK_83
58.2
NK_84
57.1
NK_85
56.6
NK_86
55.4
NK_87
55.1
NK_88
54.2
NK_89
52.0
NK_90
48.6
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