A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
362.9
nTPM
Monaco:
416.6
nTPM
Schmiedel:
71.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
362.9
HPA sample
nTPM
Memory B-cell nTPM: 362.9
Samples: 6
Max nTPM: 478.4
Min nTPM: 240.7
P10809_1017
240.7
P10809_1025
411.1
P10809_1044
478.4
P10809_1063
327.4
P10809_1092
361.9
P10809_1105
358.0
Naive B-cell nTPM: 357.1
Samples: 6
Max nTPM: 625.2
Min nTPM: 207.0
P10809_1011
207.0
P10809_1029
329.7
P10809_1048
625.2
P10809_1067
263.6
P10809_1091
356.9
P10809_1104
360.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
416.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 375.0
Samples: 4
Max nTPM: 436.0
Min nTPM: 331.2
RHH5310_R3677
354.8
RHH5218_R3590
377.8
RHH5247_R3619
436.0
RHH5276_R3648
331.2
Naive B-cell nTPM: 367.6
Samples: 4
Max nTPM: 426.6
Min nTPM: 282.7
RHH5308_R3675
345.5
RHH5216_R3588
426.6
RHH5245_R3617
282.7
RHH5274_R3646
415.5
Non-switched memory B-cell nTPM: 403.5
Samples: 4
Max nTPM: 456.0
Min nTPM: 362.0
RHH5309_R3676
362.0
RHH5217_R3589
398.8
RHH5246_R3618
456.0
RHH5275_R3647
397.2
Plasmablast nTPM: 406.7
Samples: 4
Max nTPM: 470.5
Min nTPM: 330.2
RHH5312_R3679
421.8
RHH5220_R3592
330.2
RHH5249_R3621
470.5
RHH5278_R3650
404.4
Switched memory B-cell nTPM: 416.6
Samples: 4
Max nTPM: 443.0
Min nTPM: 370.3
RHH5311_R3678
370.3
RHH5219_R3591
433.7
RHH5248_R3620
443.0
RHH5277_R3649
419.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.1
Schmiedel sample id
TPM
Naive B-cell TPM: 71.1
Samples: 91
Max TPM: 102.1
Min TPM: 32.2
B_CELL_NAIVE_1
102.1
B_CELL_NAIVE_2
100.6
B_CELL_NAIVE_3
98.4
B_CELL_NAIVE_4
97.2
B_CELL_NAIVE_5
93.1
B_CELL_NAIVE_6
92.9
B_CELL_NAIVE_7
92.6
B_CELL_NAIVE_8
91.8
B_CELL_NAIVE_9
91.0
B_CELL_NAIVE_10
90.8
B_CELL_NAIVE_11
88.9
B_CELL_NAIVE_12
88.6
B_CELL_NAIVE_13
86.8
B_CELL_NAIVE_14
86.6
B_CELL_NAIVE_15
86.1
B_CELL_NAIVE_16
85.4
B_CELL_NAIVE_17
83.9
B_CELL_NAIVE_18
82.9
B_CELL_NAIVE_19
82.4
B_CELL_NAIVE_20
81.7
B_CELL_NAIVE_21
81.2
B_CELL_NAIVE_22
80.1
B_CELL_NAIVE_23
79.4
B_CELL_NAIVE_24
79.3
B_CELL_NAIVE_25
78.9
B_CELL_NAIVE_26
78.5
B_CELL_NAIVE_27
77.6
B_CELL_NAIVE_28
77.3
B_CELL_NAIVE_29
77.0
B_CELL_NAIVE_30
75.9
B_CELL_NAIVE_31
75.7
B_CELL_NAIVE_32
75.6
B_CELL_NAIVE_33
75.3
B_CELL_NAIVE_34
75.0
B_CELL_NAIVE_35
73.9
B_CELL_NAIVE_36
73.8
B_CELL_NAIVE_37
73.4
B_CELL_NAIVE_38
73.2
B_CELL_NAIVE_39
72.8
B_CELL_NAIVE_40
72.2
B_CELL_NAIVE_41
71.6
B_CELL_NAIVE_42
71.0
B_CELL_NAIVE_43
70.7
B_CELL_NAIVE_44
70.6
B_CELL_NAIVE_45
70.6
B_CELL_NAIVE_46
70.4
B_CELL_NAIVE_47
69.6
B_CELL_NAIVE_48
68.9
B_CELL_NAIVE_49
68.1
B_CELL_NAIVE_50
67.7
B_CELL_NAIVE_51
67.4
B_CELL_NAIVE_52
67.3
B_CELL_NAIVE_53
67.3
B_CELL_NAIVE_54
67.0
B_CELL_NAIVE_55
66.8
B_CELL_NAIVE_56
66.8
B_CELL_NAIVE_57
66.6
B_CELL_NAIVE_58
65.6
B_CELL_NAIVE_59
65.6
B_CELL_NAIVE_60
65.5
B_CELL_NAIVE_61
64.9
B_CELL_NAIVE_62
64.5
B_CELL_NAIVE_63
64.4
B_CELL_NAIVE_64
64.4
B_CELL_NAIVE_65
63.3
B_CELL_NAIVE_66
63.1
B_CELL_NAIVE_67
62.9
B_CELL_NAIVE_68
62.8
B_CELL_NAIVE_69
62.6
B_CELL_NAIVE_70
61.8
B_CELL_NAIVE_71
61.6
B_CELL_NAIVE_72
61.4
B_CELL_NAIVE_73
61.0
B_CELL_NAIVE_74
59.3
B_CELL_NAIVE_75
59.2
B_CELL_NAIVE_76
59.0
B_CELL_NAIVE_77
58.1
B_CELL_NAIVE_78
57.6
B_CELL_NAIVE_79
57.0
B_CELL_NAIVE_80
56.7
B_CELL_NAIVE_81
56.0
B_CELL_NAIVE_82
55.9
B_CELL_NAIVE_83
55.2
B_CELL_NAIVE_84
54.8
B_CELL_NAIVE_85
53.0
B_CELL_NAIVE_86
52.9
B_CELL_NAIVE_87
52.7
B_CELL_NAIVE_88
51.7
B_CELL_NAIVE_89
50.4
B_CELL_NAIVE_90
35.9
B_CELL_NAIVE_91
32.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.