A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
307.4
nTPM
Monaco:
454.2
nTPM
Schmiedel:
112.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
307.4
HPA sample
nTPM
Classical monocyte nTPM: 231.7
Samples: 6
Max nTPM: 283.4
Min nTPM: 198.3
P10809_1003
213.3
P10809_1020
253.2
P10809_1039
283.4
P10809_1058
198.3
P10809_1080
240.2
P10809_1107
201.7
Intermediate monocyte nTPM: 279.5
Samples: 6
Max nTPM: 374.7
Min nTPM: 210.5
P10809_1004
210.5
P10809_1023
280.2
P10809_1042
374.7
P10809_1061
282.0
P10809_1081
272.5
P10809_1108
257.1
Non-classical monocyte nTPM: 307.4
Samples: 5
Max nTPM: 451.4
Min nTPM: 197.0
P10809_1005
197.0
P10809_1053
364.8
P10809_1072
451.4
P10809_1082
258.3
P10809_1109
265.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
454.2
Monaco sample
nTPM
Classical monocyte nTPM: 351.4
Samples: 4
Max nTPM: 474.7
Min nTPM: 288.5
RHH5313_R3680
288.5
RHH5221_R3593
474.7
RHH5250_R3622
296.9
RHH5279_R3651
345.4
Intermediate monocyte nTPM: 384.9
Samples: 4
Max nTPM: 435.1
Min nTPM: 338.3
RHH5314_R3681
338.3
RHH5222_R3594
426.8
RHH5251_R3623
339.5
RHH5280_R3652
435.1
Non-classical monocyte nTPM: 454.3
Samples: 4
Max nTPM: 501.9
Min nTPM: 416.6
RHH5315_R3682
416.6
RHH5223_R3595
501.9
RHH5252_R3624
423.4
RHH5281_R3653
475.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.4
Schmiedel sample id
TPM
Classical monocyte TPM: 40.8
Samples: 91
Max TPM: 63.2
Min TPM: 23.1
MONOCYTES_1
63.2
MONOCYTES_2
62.3
MONOCYTES_3
58.8
MONOCYTES_4
58.7
MONOCYTES_5
55.6
MONOCYTES_6
55.3
MONOCYTES_7
53.8
MONOCYTES_8
53.6
MONOCYTES_9
53.1
MONOCYTES_10
52.6
MONOCYTES_11
52.2
MONOCYTES_12
51.4
MONOCYTES_13
51.1
MONOCYTES_14
51.0
MONOCYTES_15
50.9
MONOCYTES_16
50.7
MONOCYTES_17
50.1
MONOCYTES_18
50.0
MONOCYTES_19
49.9
MONOCYTES_20
49.3
MONOCYTES_21
49.0
MONOCYTES_22
48.7
MONOCYTES_23
48.7
MONOCYTES_24
47.3
MONOCYTES_25
47.0
MONOCYTES_26
46.8
MONOCYTES_27
46.1
MONOCYTES_28
46.1
MONOCYTES_29
46.0
MONOCYTES_30
45.5
MONOCYTES_31
45.2
MONOCYTES_32
44.9
MONOCYTES_33
44.7
MONOCYTES_34
44.7
MONOCYTES_35
44.4
MONOCYTES_36
43.9
MONOCYTES_37
43.6
MONOCYTES_38
43.3
MONOCYTES_39
41.9
MONOCYTES_40
41.9
MONOCYTES_41
41.8
MONOCYTES_42
41.7
MONOCYTES_43
41.2
MONOCYTES_44
40.9
MONOCYTES_45
40.6
MONOCYTES_46
40.5
MONOCYTES_47
39.9
MONOCYTES_48
39.5
MONOCYTES_49
39.4
MONOCYTES_50
39.4
MONOCYTES_51
39.0
MONOCYTES_52
38.8
MONOCYTES_53
38.7
MONOCYTES_54
38.6
MONOCYTES_55
38.3
MONOCYTES_56
38.2
MONOCYTES_57
38.1
MONOCYTES_58
37.9
MONOCYTES_59
37.8
MONOCYTES_60
37.7
MONOCYTES_61
35.8
MONOCYTES_62
35.3
MONOCYTES_63
35.2
MONOCYTES_64
34.7
MONOCYTES_65
34.6
MONOCYTES_66
34.4
MONOCYTES_67
34.1
MONOCYTES_68
33.8
MONOCYTES_69
33.2
MONOCYTES_70
32.0
MONOCYTES_71
31.8
MONOCYTES_72
31.3
MONOCYTES_73
31.2
MONOCYTES_74
31.1
MONOCYTES_75
30.8
MONOCYTES_76
30.4
MONOCYTES_77
30.2
MONOCYTES_78
29.9
MONOCYTES_79
29.4
MONOCYTES_80
29.1
MONOCYTES_81
28.9
MONOCYTES_82
28.3
MONOCYTES_83
28.1
MONOCYTES_84
27.8
MONOCYTES_85
27.7
MONOCYTES_86
27.4
MONOCYTES_87
27.0
MONOCYTES_88
26.0
MONOCYTES_89
25.7
MONOCYTES_90
24.7
MONOCYTES_91
23.1
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Non-classical monocyte TPM: 112.4
Samples: 90
Max TPM: 157.5
Min TPM: 72.5
M2_1
157.5
M2_2
155.4
M2_3
154.8
M2_4
153.9
M2_5
151.5
M2_6
147.3
M2_7
145.6
M2_8
144.3
M2_9
137.4
M2_10
136.6
M2_11
136.4
M2_12
135.1
M2_13
134.9
M2_14
134.9
M2_15
133.0
M2_16
130.3
M2_17
127.6
M2_18
127.2
M2_19
126.6
M2_20
125.2
M2_21
123.7
M2_22
122.1
M2_23
121.2
M2_24
121.0
M2_25
120.8
M2_26
120.6
M2_27
119.4
M2_28
118.6
M2_29
118.0
M2_30
117.2
M2_31
116.7
M2_32
116.2
M2_33
116.0
M2_34
115.9
M2_35
115.4
M2_36
114.7
M2_37
113.6
M2_38
113.6
M2_39
112.4
M2_40
111.8
M2_41
111.4
M2_42
111.3
M2_43
110.6
M2_44
110.3
M2_45
110.2
M2_46
109.8
M2_47
108.3
M2_48
107.4
M2_49
107.3
M2_50
106.3
M2_51
106.1
M2_52
105.6
M2_53
104.8
M2_54
104.8
M2_55
104.5
M2_56
104.4
M2_57
104.3
M2_58
104.3
M2_59
104.2
M2_60
103.7
M2_61
103.4
M2_62
102.8
M2_63
102.0
M2_64
101.8
M2_65
101.6
M2_66
101.1
M2_67
99.5
M2_68
99.4
M2_69
99.1
M2_70
99.0
M2_71
98.5
M2_72
98.3
M2_73
97.2
M2_74
96.9
M2_75
95.9
M2_76
95.5
M2_77
95.4
M2_78
93.9
M2_79
93.7
M2_80
92.9
M2_81
92.5
M2_82
92.0
M2_83
91.7
M2_84
91.5
M2_85
91.4
M2_86
88.5
M2_87
85.5
M2_88
82.7
M2_89
77.1
M2_90
72.5
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