A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
405.5
nTPM
Monaco:
529.5
nTPM
Schmiedel:
113.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
405.5
HPA sample
nTPM
NK-cell nTPM: 405.5
Samples: 6
Max nTPM: 551.8
Min nTPM: 234.7
P10809_1013
278.4
P10809_1033
547.4
P10809_1052
433.0
P10809_1071
551.8
P10809_1093
234.7
P10809_1103
387.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
529.5
Monaco sample
nTPM
NK-cell nTPM: 529.5
Samples: 4
Max nTPM: 603.9
Min nTPM: 442.3
RHH5316_R3683
442.3
RHH5224_R3596
598.2
RHH5253_R3625
473.6
RHH5282_R3654
603.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.2
Schmiedel sample id
TPM
NK-cell TPM: 113.2
Samples: 90
Max TPM: 210.9
Min TPM: 58.7
NK_1
210.9
NK_2
205.2
NK_3
187.1
NK_4
175.3
NK_5
154.8
NK_6
143.6
NK_7
142.6
NK_8
139.5
NK_9
139.4
NK_10
136.8
NK_11
135.3
NK_12
131.1
NK_13
128.8
NK_14
128.6
NK_15
128.4
NK_16
127.9
NK_17
126.9
NK_18
126.6
NK_19
126.4
NK_20
124.9
NK_21
124.9
NK_22
124.8
NK_23
124.1
NK_24
124.1
NK_25
123.3
NK_26
121.8
NK_27
120.1
NK_28
119.3
NK_29
119.1
NK_30
119.0
NK_31
118.4
NK_32
118.2
NK_33
117.8
NK_34
117.6
NK_35
117.5
NK_36
117.5
NK_37
117.1
NK_38
117.0
NK_39
116.3
NK_40
116.3
NK_41
116.0
NK_42
115.9
NK_43
115.9
NK_44
115.9
NK_45
115.4
NK_46
114.1
NK_47
114.1
NK_48
113.1
NK_49
111.0
NK_50
109.4
NK_51
108.9
NK_52
107.8
NK_53
107.1
NK_54
106.3
NK_55
106.2
NK_56
104.9
NK_57
104.8
NK_58
104.3
NK_59
103.3
NK_60
102.7
NK_61
102.3
NK_62
101.2
NK_63
100.6
NK_64
100.3
NK_65
99.4
NK_66
98.3
NK_67
97.4
NK_68
97.1
NK_69
95.6
NK_70
95.5
NK_71
93.0
NK_72
92.9
NK_73
92.8
NK_74
92.4
NK_75
92.4
NK_76
92.0
NK_77
91.4
NK_78
90.8
NK_79
89.4
NK_80
88.6
NK_81
88.4
NK_82
84.4
NK_83
81.6
NK_84
79.7
NK_85
78.5
NK_86
76.9
NK_87
76.7
NK_88
76.6
NK_89
67.7
NK_90
58.7
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