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  • PSMA4
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:59.6 nTPM
HPA Brain:28.3 nTPM
GTEx:59.6 nTPM
FANTOM5:42.1 Scaled Tags Per Million
Pig:47.0 nTPM
Mouse:158.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.3
Sample id Sample description nTPM
Amygdala
nTPM: 28.3
2814 Male, age 76, right hemisphere 38.3
2695 Female, age 67, right hemisphere 27.3
2514 Male, age 75, right hemisphere 27.0
1987 Female, age 91, left hemisphere 25.7
2517 Female, age 94, left hemisphere 23.0
Basal amygdala
nTPM: 24.6
2110 Male, age 80, left hemisphere 29.7
1955 Male, age 76, both hemispheres 27.7
2609 Male, age 75, right hemisphere 25.4
2685 Female, age 94, left hemisphere 23.3
2243 Female, age 91, right hemisphere 22.7
2827 Female, age 67, right hemisphere 18.6
Central amygdala
nTPM: 26.4
1905 Male, age 76, both hemispheres 35.8
2701 Female, age 91, right hemisphere 25.5
2515 Male, age 75, right hemisphere 24.2
2239 Male, age 80, left hemisphere 23.5
2826 Female, age 94, left hemisphere 23.1
Corticomedial amygdala
nTPM: 24.9
2240 Male, age 76, both hemispheres 28.3
2428 Male, age 75, right hemisphere 27.5
2829 Male, age 80, left hemisphere 27.4
2429 Female, age 94, left hemisphere 25.1
2242 Female, age 91, right hemisphere 23.4
2535 Female, age 67, right hemisphere 18.1
Lateral amygdala
nTPM: 23.9
1883 Male, age 76, both hemispheres 36.8
2516 Male, age 75, right hemisphere 24.4
2534 Female, age 94, left hemisphere 21.9
2830 Female, age 67, right hemisphere 21.7
2256 Male, age 80, left hemisphere 20.9
2255 Female, age 91, right hemisphere 17.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 59.6
Samples: 181

Max nTPM: 115.4
Min nTPM: 36.3
Std nTPM: 13.4
Median nTPM: 57.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 115.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 105.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 104.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 100.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 94.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 89.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 89.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 89.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 87.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 85.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 84.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 82.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 81.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 79.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 78.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 77.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 76.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 75.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 74.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 74.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 74.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 73.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 73.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 73.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 73.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 72.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 71.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 71.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 71.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 70.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 70.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 69.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 69.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 69.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 69.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 69.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 68.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 68.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 68.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 67.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 67.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 67.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 67.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 66.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 66.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 66.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 66.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 65.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 65.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 64.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 64.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 64.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 63.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 63.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 63.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 63.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 63.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 63.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 62.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 62.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 62.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 62.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 62.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 62.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 61.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 61.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 61.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 61.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 61.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 61.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 61.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 60.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 60.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 60.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 60.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 60.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 60.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 60.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 59.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 59.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 59.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 59.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 59.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 58.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 58.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 58.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 58.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 58.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 58.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 57.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 57.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 57.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 57.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 57.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 57.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 57.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 56.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 56.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 56.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 56.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 56.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 56.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 56.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 56.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 56.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 56.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 55.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 55.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 55.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 54.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 54.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 54.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 54.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 54.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 53.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 53.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 53.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 53.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 53.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 53.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 53.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 53.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 52.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 52.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 52.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 52.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 52.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 51.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 51.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 51.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 51.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 50.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 50.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 50.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 50.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 50.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 49.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 49.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 49.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 49.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 48.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 48.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 48.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 48.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 48.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 48.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 47.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 47.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 47.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 47.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 46.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 46.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 46.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 46.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 46.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 46.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 46.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 46.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 46.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 45.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 45.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 45.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 45.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 45.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 45.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 45.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 45.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 44.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 43.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 42.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 42.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 42.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 41.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 41.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 40.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 39.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 39.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 39.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 38.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 37.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 36.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

42.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 42.1
FF:10151-102I7 76 years, female 42.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.0
Pig sample Sample description nTPM
Amygdala
nTPM: 47.1
Samples: 4

Max nTPM: 67.9
Min nTPM: 38.1
Sample A Female 67.9
Sample B Female 40.2
Sample C Male 38.1
Sample D Male 42.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 158.9
Samples: 4

Max nTPM: 170.0
Min nTPM: 147.0
Sample A Male 152.5
Sample B Male 170.0
Sample C Female 147.0
Sample D Female 165.9

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