MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.3 nTPM
HPA Brain:32.5 nTPM
GTEx:65.3 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:73.1 nTPM
Mouse:160.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
2019 Male, age 18, unknown 37.1
1827 Male, age 72, unknown 31.7
2411 Female, age 72, unknown 31.2
1833 Male, age 53, unknown 29.5
1870 Female, age 42, unknown 29.3
2219 Male, age 76, both hemispheres 25.6
1830 Male, age 51, unknown 25.5
2828 Female, age 72, unknown 24.5
2666 Male, age 74, left hemisphere 21.0
2586 Male, age 75, left hemisphere 11.5
Dorsal raphe nucleus
nTPM: 31.6
2298 Female, age 72, unknown 42.7
2750 Male, age 76, both hemispheres 33.2
2047 Male, age 72, unknown 29.1
1828 Male, age 53, unknown 28.7
2016 Female, age 72, unknown 24.2
Inferior colliculus
nTPM: 27.6
2097 Female, age 72, unknown 33.7
1848 Female, age 42, unknown 26.7
1890 Male, age 53, unknown 26.0
2849 Male, age 72, unknown 23.9
Median raphe nucleus
nTPM: 30.9
2220 Male, age 76, midline 30.9
Periaquaductal grey, anterior
nTPM: 29.0
1947 Male, age 18, unknown 30.8
2502 Female, age 75, unknown 29.8
1795 Male, age 51, unknown 26.4
Periaquaductal grey, dorsal
nTPM: 27.0
1840 Male, age 53, unknown 28.8
1831 Male, age 72, unknown 27.1
2850 Male, age 76, both hemispheres 26.4
2464 Female, age 72, unknown 25.8
Periaquaductal grey, lateral
nTPM: 26.3
2272 Male, age 74, both hemispheres 30.6
2140 Male, age 76, both hemispheres 25.6
2053 Male, age 18, unknown 22.6
Pretectal area
nTPM: 32.4
1817 Female, age 42, unknown 39.6
1944 Female, age 72, unknown 38.2
1816 Male, age 51, unknown 36.4
2007 Male, age 72, unknown 36.3
2273 Male, age 74, both hemispheres 34.3
1815 Male, age 53, unknown 34.2
2667 Female, age 75, unknown 32.2
2224 Female, age 72, unknown 30.0
2316 Male, age 76, right hemisphere 27.8
2825 Male, age 18, unknown 24.7
2407 Male, age 75, both hemispheres 22.6
Red nucleus
nTPM: 27.1
1821 Female, age 72, unknown 38.1
2823 Male, age 76, right hemisphere 31.6
2785 Male, age 18, unknown 30.6
1954 Female, age 42, unknown 29.0
2725 Female, age 75, unknown 27.9
2503 Female, age 72, unknown 27.8
1865 Male, age 51, unknown 27.0
1904 Male, age 53, unknown 26.0
2769 Male, age 72, unknown 23.7
2588 Male, age 74, left hemisphere 21.9
2227 Male, age 72, unknown 20.8
2584 Male, age 75, left hemisphere 20.5
Substantia nigra
nTPM: 32.5
2241 Male, age 72, unknown 46.3
1889 Female, age 72, unknown 38.7
1916 Female, age 42, unknown 37.2
2409 Female, age 72, unknown 35.4
1941 Male, age 53, unknown 33.8
1851 Male, age 51, unknown 33.4
2590 Female, age 75, unknown 27.2
2665 Male, age 74, both hemispheres 24.8
2699 Male, age 18, unknown 24.7
2583 Male, age 75, right hemisphere 23.4
Superior colliculus
nTPM: 27.4
1895 Male, age 76, right hemisphere 33.2
2087 Female, age 72, unknown 32.1
2587 Male, age 74, left hemisphere 31.1
2261 Male, age 18, unknown 29.3
2668 Female, age 75, unknown 29.0
1796 Male, age 53, unknown 26.7
1913 Female, age 42, unknown 26.5
1839 Male, age 51, unknown 25.9
1995 Male, age 72, unknown 23.1
2664 Male, age 75, both hemispheres 16.8
Ventral tegmental area
nTPM: 30.5
2218 Male, age 76, both hemispheres 34.1
1915 Female, age 42, unknown 32.9
2410 Female, age 72, unknown 32.7
2223 Female, age 72, unknown 29.0
1942 Male, age 51, unknown 28.7
2021 Male, age 53, unknown 25.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.3
Samples: 183

Max nTPM: 128.5
Min nTPM: 39.4
Std nTPM: 13.9
Median nTPM: 63.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 128.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 104.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 103.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 97.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 96.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 92.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 92.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 92.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 92.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 89.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 88.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.5
FF:10158-103A5 76 years, female 49.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 73.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.0
Samples: 4

Max nTPM: 85.4
Min nTPM: 46.2
Sample A Female 85.4
Sample B Female 59.6
Sample C Male 72.8
Sample D Male 46.2
Midbrain
nTPM: 66.9
Samples: 4

Max nTPM: 78.5
Min nTPM: 59.3
Sample A Female 78.5
Sample B Female 60.4
Sample C Male 69.5
Sample D Male 59.3
Periaqueductal gray
nTPM: 61.7
Samples: 3

Max nTPM: 73.1
Min nTPM: 50.7
Sample B Female 50.7
Sample C Male 73.1
Sample D Male 61.3
Superior colliculi
nTPM: 73.1
Samples: 4

Max nTPM: 87.2
Min nTPM: 57.9
Sample A Female 87.2
Sample B Female 57.9
Sample C Male 75.7
Sample D Male 71.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 160.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.9
Samples: 4

Max nTPM: 168.1
Min nTPM: 151.6
Sample A Male 168.1
Sample B Male 161.7
Sample C Female 151.6
Sample D Female 162.2

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