A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.7
nTPM
Monaco:
43.9
nTPM
Schmiedel:
70.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.7
HPA sample
nTPM
Memory B-cell nTPM: 16.7
Samples: 6
Max nTPM: 30.4
Min nTPM: 9.6
P10809_1017
14.2
P10809_1025
14.2
P10809_1044
30.4
P10809_1063
13.9
P10809_1092
18.1
P10809_1105
9.6
Naive B-cell nTPM: 14.4
Samples: 6
Max nTPM: 31.7
Min nTPM: 9.3
P10809_1011
10.5
P10809_1029
9.3
P10809_1048
31.7
P10809_1067
11.5
P10809_1091
13.6
P10809_1104
9.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 37.0
Samples: 4
Max nTPM: 46.3
Min nTPM: 30.6
RHH5310_R3677
33.0
RHH5218_R3590
37.9
RHH5247_R3619
30.6
RHH5276_R3648
46.3
Naive B-cell nTPM: 37.3
Samples: 4
Max nTPM: 46.7
Min nTPM: 24.9
RHH5308_R3675
30.8
RHH5216_R3588
46.7
RHH5245_R3617
24.9
RHH5274_R3646
46.7
Non-switched memory B-cell nTPM: 35.4
Samples: 4
Max nTPM: 40.1
Min nTPM: 31.3
RHH5309_R3676
40.1
RHH5217_R3589
35.8
RHH5246_R3618
34.3
RHH5275_R3647
31.3
Plasmablast nTPM: 43.9
Samples: 4
Max nTPM: 51.8
Min nTPM: 33.1
RHH5312_R3679
45.8
RHH5220_R3592
33.1
RHH5249_R3621
44.9
RHH5278_R3650
51.8
Switched memory B-cell nTPM: 39.1
Samples: 4
Max nTPM: 45.9
Min nTPM: 36.1
RHH5311_R3678
36.1
RHH5219_R3591
36.4
RHH5248_R3620
45.9
RHH5277_R3649
37.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.6
Schmiedel sample id
TPM
Naive B-cell TPM: 70.6
Samples: 91
Max TPM: 103.7
Min TPM: 45.3
B_CELL_NAIVE_1
103.7
B_CELL_NAIVE_2
103.5
B_CELL_NAIVE_3
96.8
B_CELL_NAIVE_4
95.6
B_CELL_NAIVE_5
95.4
B_CELL_NAIVE_6
94.1
B_CELL_NAIVE_7
93.6
B_CELL_NAIVE_8
93.3
B_CELL_NAIVE_9
90.2
B_CELL_NAIVE_10
90.2
B_CELL_NAIVE_11
89.9
B_CELL_NAIVE_12
89.0
B_CELL_NAIVE_13
88.5
B_CELL_NAIVE_14
88.5
B_CELL_NAIVE_15
88.1
B_CELL_NAIVE_16
87.4
B_CELL_NAIVE_17
87.0
B_CELL_NAIVE_18
86.6
B_CELL_NAIVE_19
84.8
B_CELL_NAIVE_20
83.1
B_CELL_NAIVE_21
80.9
B_CELL_NAIVE_22
79.2
B_CELL_NAIVE_23
78.9
B_CELL_NAIVE_24
78.3
B_CELL_NAIVE_25
77.4
B_CELL_NAIVE_26
77.2
B_CELL_NAIVE_27
76.5
B_CELL_NAIVE_28
74.4
B_CELL_NAIVE_29
73.5
B_CELL_NAIVE_30
72.9
B_CELL_NAIVE_31
72.7
B_CELL_NAIVE_32
72.4
B_CELL_NAIVE_33
70.2
B_CELL_NAIVE_34
69.6
B_CELL_NAIVE_35
69.0
B_CELL_NAIVE_36
69.0
B_CELL_NAIVE_37
68.5
B_CELL_NAIVE_38
68.5
B_CELL_NAIVE_39
68.0
B_CELL_NAIVE_40
67.9
B_CELL_NAIVE_41
67.8
B_CELL_NAIVE_42
67.8
B_CELL_NAIVE_43
67.6
B_CELL_NAIVE_44
66.9
B_CELL_NAIVE_45
66.9
B_CELL_NAIVE_46
66.4
B_CELL_NAIVE_47
66.4
B_CELL_NAIVE_48
66.3
B_CELL_NAIVE_49
65.8
B_CELL_NAIVE_50
65.8
B_CELL_NAIVE_51
65.7
B_CELL_NAIVE_52
65.5
B_CELL_NAIVE_53
65.3
B_CELL_NAIVE_54
65.3
B_CELL_NAIVE_55
65.0
B_CELL_NAIVE_56
64.8
B_CELL_NAIVE_57
64.3
B_CELL_NAIVE_58
64.2
B_CELL_NAIVE_59
64.1
B_CELL_NAIVE_60
64.1
B_CELL_NAIVE_61
63.7
B_CELL_NAIVE_62
63.6
B_CELL_NAIVE_63
63.5
B_CELL_NAIVE_64
63.5
B_CELL_NAIVE_65
63.2
B_CELL_NAIVE_66
62.9
B_CELL_NAIVE_67
62.8
B_CELL_NAIVE_68
61.6
B_CELL_NAIVE_69
61.6
B_CELL_NAIVE_70
61.3
B_CELL_NAIVE_71
61.3
B_CELL_NAIVE_72
59.8
B_CELL_NAIVE_73
59.7
B_CELL_NAIVE_74
59.6
B_CELL_NAIVE_75
59.3
B_CELL_NAIVE_76
58.9
B_CELL_NAIVE_77
58.8
B_CELL_NAIVE_78
58.8
B_CELL_NAIVE_79
58.6
B_CELL_NAIVE_80
57.5
B_CELL_NAIVE_81
57.2
B_CELL_NAIVE_82
56.7
B_CELL_NAIVE_83
56.7
B_CELL_NAIVE_84
56.3
B_CELL_NAIVE_85
56.3
B_CELL_NAIVE_86
54.5
B_CELL_NAIVE_87
54.0
B_CELL_NAIVE_88
53.8
B_CELL_NAIVE_89
53.8
B_CELL_NAIVE_90
48.6
B_CELL_NAIVE_91
45.3
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