A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.3
nTPM
Monaco:
38.1
nTPM
Schmiedel:
38.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.3
HPA sample
nTPM
Classical monocyte nTPM: 10.1
Samples: 6
Max nTPM: 13.9
Min nTPM: 6.2
P10809_1003
12.4
P10809_1020
13.9
P10809_1039
11.4
P10809_1058
9.0
P10809_1080
7.7
P10809_1107
6.2
Intermediate monocyte nTPM: 13.3
Samples: 6
Max nTPM: 19.6
Min nTPM: 8.6
P10809_1004
14.3
P10809_1023
19.6
P10809_1042
14.8
P10809_1061
13.2
P10809_1081
8.6
P10809_1108
9.0
Non-classical monocyte nTPM: 8.9
Samples: 5
Max nTPM: 15.4
Min nTPM: 0.1
P10809_1005
14.8
P10809_1053
15.4
P10809_1072
0.1
P10809_1082
7.8
P10809_1109
6.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.1
Monaco sample
nTPM
Classical monocyte nTPM: 31.2
Samples: 4
Max nTPM: 37.0
Min nTPM: 26.4
RHH5313_R3680
26.4
RHH5221_R3593
37.0
RHH5250_R3622
31.7
RHH5279_R3651
29.7
Intermediate monocyte nTPM: 33.3
Samples: 4
Max nTPM: 40.0
Min nTPM: 20.9
RHH5314_R3681
33.0
RHH5222_R3594
40.0
RHH5251_R3623
20.9
RHH5280_R3652
39.1
Non-classical monocyte nTPM: 38.2
Samples: 4
Max nTPM: 43.4
Min nTPM: 33.6
RHH5315_R3682
37.5
RHH5223_R3595
43.4
RHH5252_R3624
38.1
RHH5281_R3653
33.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.7
Schmiedel sample id
TPM
Classical monocyte TPM: 38.7
Samples: 91
Max TPM: 52.8
Min TPM: 28.3
MONOCYTES_1
52.8
MONOCYTES_2
52.2
MONOCYTES_3
51.8
MONOCYTES_4
51.8
MONOCYTES_5
50.3
MONOCYTES_6
49.5
MONOCYTES_7
49.1
MONOCYTES_8
48.2
MONOCYTES_9
47.4
MONOCYTES_10
46.6
MONOCYTES_11
46.6
MONOCYTES_12
45.4
MONOCYTES_13
45.0
MONOCYTES_14
44.7
MONOCYTES_15
44.5
MONOCYTES_16
44.4
MONOCYTES_17
44.1
MONOCYTES_18
43.8
MONOCYTES_19
43.4
MONOCYTES_20
43.0
MONOCYTES_21
42.9
MONOCYTES_22
42.9
MONOCYTES_23
42.9
MONOCYTES_24
42.0
MONOCYTES_25
42.0
MONOCYTES_26
41.6
MONOCYTES_27
41.5
MONOCYTES_28
41.4
MONOCYTES_29
41.3
MONOCYTES_30
41.0
MONOCYTES_31
40.9
MONOCYTES_32
40.7
MONOCYTES_33
40.7
MONOCYTES_34
40.5
MONOCYTES_35
39.9
MONOCYTES_36
39.8
MONOCYTES_37
39.6
MONOCYTES_38
39.5
MONOCYTES_39
39.5
MONOCYTES_40
39.5
MONOCYTES_41
39.0
MONOCYTES_42
38.8
MONOCYTES_43
38.7
MONOCYTES_44
38.2
MONOCYTES_45
37.9
MONOCYTES_46
37.7
MONOCYTES_47
37.5
MONOCYTES_48
37.2
MONOCYTES_49
37.1
MONOCYTES_50
37.1
MONOCYTES_51
36.8
MONOCYTES_52
36.7
MONOCYTES_53
36.7
MONOCYTES_54
36.6
MONOCYTES_55
36.5
MONOCYTES_56
36.2
MONOCYTES_57
36.1
MONOCYTES_58
35.8
MONOCYTES_59
35.8
MONOCYTES_60
35.7
MONOCYTES_61
35.7
MONOCYTES_62
35.4
MONOCYTES_63
35.3
MONOCYTES_64
35.2
MONOCYTES_65
35.2
MONOCYTES_66
35.1
MONOCYTES_67
34.9
MONOCYTES_68
34.8
MONOCYTES_69
34.6
MONOCYTES_70
34.5
MONOCYTES_71
34.3
MONOCYTES_72
34.2
MONOCYTES_73
34.0
MONOCYTES_74
33.9
MONOCYTES_75
33.6
MONOCYTES_76
33.0
MONOCYTES_77
33.0
MONOCYTES_78
32.7
MONOCYTES_79
32.3
MONOCYTES_80
31.9
MONOCYTES_81
31.9
MONOCYTES_82
31.5
MONOCYTES_83
31.3
MONOCYTES_84
30.8
MONOCYTES_85
30.8
MONOCYTES_86
30.2
MONOCYTES_87
29.7
MONOCYTES_88
29.6
MONOCYTES_89
29.5
MONOCYTES_90
29.0
MONOCYTES_91
28.3
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Non-classical monocyte TPM: 37.2
Samples: 90
Max TPM: 54.0
Min TPM: 26.3
M2_1
54.0
M2_2
53.6
M2_3
51.9
M2_4
49.8
M2_5
49.4
M2_6
49.2
M2_7
48.6
M2_8
48.5
M2_9
48.2
M2_10
47.7
M2_11
47.0
M2_12
45.9
M2_13
45.7
M2_14
45.7
M2_15
44.8
M2_16
44.2
M2_17
44.1
M2_18
43.9
M2_19
43.7
M2_20
43.7
M2_21
43.3
M2_22
43.2
M2_23
42.8
M2_24
41.2
M2_25
41.0
M2_26
40.8
M2_27
40.5
M2_28
40.4
M2_29
40.4
M2_30
40.3
M2_31
39.9
M2_32
39.5
M2_33
38.8
M2_34
38.2
M2_35
38.1
M2_36
37.9
M2_37
37.8
M2_38
37.6
M2_39
37.5
M2_40
37.3
M2_41
36.4
M2_42
36.1
M2_43
35.9
M2_44
35.6
M2_45
35.0
M2_46
34.7
M2_47
34.7
M2_48
34.5
M2_49
34.4
M2_50
34.3
M2_51
34.2
M2_52
34.2
M2_53
34.2
M2_54
34.0
M2_55
34.0
M2_56
33.9
M2_57
33.8
M2_58
33.7
M2_59
33.4
M2_60
33.0
M2_61
32.5
M2_62
32.5
M2_63
32.4
M2_64
32.0
M2_65
31.9
M2_66
31.8
M2_67
31.8
M2_68
31.8
M2_69
31.7
M2_70
31.6
M2_71
31.6
M2_72
31.3
M2_73
31.1
M2_74
30.9
M2_75
30.8
M2_76
30.8
M2_77
30.4
M2_78
30.4
M2_79
30.2
M2_80
30.0
M2_81
29.7
M2_82
29.6
M2_83
28.9
M2_84
28.8
M2_85
28.4
M2_86
28.1
M2_87
27.5
M2_88
27.0
M2_89
26.7
M2_90
26.3
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