A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.1
nTPM
Monaco:
47.5
nTPM
Schmiedel:
69.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.1
HPA sample
nTPM
NK-cell nTPM: 21.1
Samples: 6
Max nTPM: 54.6
Min nTPM: 6.4
P10809_1013
9.7
P10809_1033
13.2
P10809_1052
6.4
P10809_1071
14.3
P10809_1093
54.6
P10809_1103
28.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.5
Monaco sample
nTPM
NK-cell nTPM: 47.5
Samples: 4
Max nTPM: 56.1
Min nTPM: 40.1
RHH5316_R3683
40.9
RHH5224_R3596
40.1
RHH5253_R3625
56.1
RHH5282_R3654
52.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.2
Schmiedel sample id
TPM
NK-cell TPM: 69.2
Samples: 90
Max TPM: 107.1
Min TPM: 40.6
NK_1
107.1
NK_2
97.0
NK_3
94.7
NK_4
91.7
NK_5
91.4
NK_6
89.9
NK_7
89.6
NK_8
88.2
NK_9
86.3
NK_10
86.3
NK_11
86.0
NK_12
85.9
NK_13
85.9
NK_14
85.7
NK_15
85.2
NK_16
83.1
NK_17
82.4
NK_18
82.4
NK_19
81.1
NK_20
80.9
NK_21
79.1
NK_22
78.3
NK_23
76.9
NK_24
76.7
NK_25
76.3
NK_26
74.8
NK_27
74.8
NK_28
74.6
NK_29
74.0
NK_30
72.5
NK_31
71.8
NK_32
71.0
NK_33
69.7
NK_34
69.7
NK_35
67.5
NK_36
67.3
NK_37
66.9
NK_38
66.9
NK_39
66.7
NK_40
66.6
NK_41
66.6
NK_42
66.4
NK_43
66.1
NK_44
65.7
NK_45
65.7
NK_46
64.3
NK_47
64.2
NK_48
64.2
NK_49
64.0
NK_50
64.0
NK_51
63.6
NK_52
63.4
NK_53
63.4
NK_54
63.3
NK_55
63.1
NK_56
62.9
NK_57
62.9
NK_58
62.8
NK_59
62.7
NK_60
62.4
NK_61
62.2
NK_62
62.0
NK_63
61.8
NK_64
61.4
NK_65
61.3
NK_66
61.1
NK_67
60.9
NK_68
60.9
NK_69
60.8
NK_70
60.5
NK_71
60.1
NK_72
59.9
NK_73
59.9
NK_74
59.6
NK_75
59.0
NK_76
58.9
NK_77
58.8
NK_78
58.8
NK_79
57.2
NK_80
56.9
NK_81
56.8
NK_82
56.5
NK_83
56.4
NK_84
56.2
NK_85
55.8
NK_86
55.7
NK_87
55.6
NK_88
55.0
NK_89
54.8
NK_90
40.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
