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  • AP2S1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:156.2 nTPM
HPA Brain:75.4 nTPM
GTEx:156.2 nTPM
FANTOM5:81.5 Scaled Tags Per Million
Pig:107.3 nTPM
Mouse:367.4 nTPM
Allen mouse:14.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.4
Sample id Sample description nTPM
Amygdala
nTPM: 75.4
2814 Male, age 76, right hemisphere 87.6
1987 Female, age 91, left hemisphere 84.0
2517 Female, age 94, left hemisphere 76.0
2514 Male, age 75, right hemisphere 74.2
2695 Female, age 67, right hemisphere 55.2
Basal amygdala
nTPM: 66.3
2685 Female, age 94, left hemisphere 79.0
2110 Male, age 80, left hemisphere 76.2
2243 Female, age 91, right hemisphere 70.1
1955 Male, age 76, both hemispheres 64.6
2609 Male, age 75, right hemisphere 63.1
2827 Female, age 67, right hemisphere 45.0
Central amygdala
nTPM: 74.4
2826 Female, age 94, left hemisphere 92.7
1905 Male, age 76, both hemispheres 83.9
2239 Male, age 80, left hemisphere 70.6
2515 Male, age 75, right hemisphere 64.8
2701 Female, age 91, right hemisphere 60.0
Corticomedial amygdala
nTPM: 69.2
2829 Male, age 80, left hemisphere 94.1
2242 Female, age 91, right hemisphere 74.5
2428 Male, age 75, right hemisphere 73.8
2429 Female, age 94, left hemisphere 72.4
2240 Male, age 76, both hemispheres 53.5
2535 Female, age 67, right hemisphere 46.7
Lateral amygdala
nTPM: 71.6
2534 Female, age 94, left hemisphere 101.9
1883 Male, age 76, both hemispheres 90.8
2516 Male, age 75, right hemisphere 72.2
2255 Female, age 91, right hemisphere 59.2
2256 Male, age 80, left hemisphere 57.2
2830 Female, age 67, right hemisphere 48.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

156.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 156.2
Samples: 181

Max nTPM: 499.0
Min nTPM: 69.5
Std nTPM: 60.5
Median nTPM: 146.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 499.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 370.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 352.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 335.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 306.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 294.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 280.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 273.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 264.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 264.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 256.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 251.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 237.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 234.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 231.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 229.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 227.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 227.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 225.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 224.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 223.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 220.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 215.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 213.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 213.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 212.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 212.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 210.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 204.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 203.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 202.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 202.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 201.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 200.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 200.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 199.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 198.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 196.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 195.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 193.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 192.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 190.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 189.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 189.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 185.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 182.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 182.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 181.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 181.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 180.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 179.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 177.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 176.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 175.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 175.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 174.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 174.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 173.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 172.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 171.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 170.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 170.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 169.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 169.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 168.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 166.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 165.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 160.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 160.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 159.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 158.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 157.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 157.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 156.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 154.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 154.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 153.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 153.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 153.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 153.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 151.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 150.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 150.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 149.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 149.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 149.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 148.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 147.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 147.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 146.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 146.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 145.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 145.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 143.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 143.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 141.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 141.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 139.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 139.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 138.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 138.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 138.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 138.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 137.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 137.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 136.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 133.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 132.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 131.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 131.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 130.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 129.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 129.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 128.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 127.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 126.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 126.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 124.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 124.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 124.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 124.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 123.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 122.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 121.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 120.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 119.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 119.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 118.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 117.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 117.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 116.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 116.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 115.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 115.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 115.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 114.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 112.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 112.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 111.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 111.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 111.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 111.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 110.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 107.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 106.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 106.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 106.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 105.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 104.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 104.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 103.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 101.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 101.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 101.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 101.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 101.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 99.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 99.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 97.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 97.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 96.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 94.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 93.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 91.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 91.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 90.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 90.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 90.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 89.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 89.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 85.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 85.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 83.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 82.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 80.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 77.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 77.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 75.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 72.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 70.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 69.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 81.5
FF:10151-102I7 76 years, female 81.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.3
Pig sample Sample description nTPM
Amygdala
nTPM: 107.3
Samples: 4

Max nTPM: 162.2
Min nTPM: 83.9
Sample A Female 162.2
Sample B Female 83.9
Sample C Male 93.7
Sample D Male 89.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

367.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 367.4
Samples: 4

Max nTPM: 406.4
Min nTPM: 337.3
Sample A Male 366.3
Sample B Male 337.3
Sample C Female 406.4
Sample D Female 359.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.8
71836889 Antisense, RP_051017_02_F07, Mouse strain C57BL/6J (56 days, male) 15.5
68743955 Antisense, RP_050203_01_H10, Mouse strain C57BL/6J (56 days, male) 14.1

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