HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:138.7 nTPM
HPA Brain:118.6 nTPM
GTEx:138.7 nTPM
FANTOM5:96.4 Scaled Tags Per Million
Pig:150.8 nTPM
Mouse:282.1 nTPM
Allen mouse:13.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 118.6
Sample id Sample description nTPM
Hippocampus
nTPM: 80.6
1898 Male, age 80, left hemisphere 117.3
1855 Male, age 76, left hemisphere 82.8
2621 Female, age 67, right hemisphere 77.3
2148 Female, age 91, left hemisphere 71.1
2529 Female, age 94, left hemisphere 67.8
1911 Female, age 85, right hemisphere 66.9
Dentate gyrus
nTPM: 87.0
1927 Female, age 91, both hemispheres 110.3
2010 Male, age 76, both hemispheres 105.6
2530 Female, age 94, left hemisphere 87.9
2246 Female, age 85, both hemispheres 78.3
2528 Male, age 74, both hemispheres 72.3
2531 Female, age 67, both hemispheres 67.8
Entorhinal gyrus
nTPM: 89.1
2764 Male, age 80, right hemisphere 119.0
1938 Female, age 85, left hemisphere 107.4
2613 Female, age 94, left hemisphere 91.2
1787 Male, age 76, left hemisphere 86.0
2117 Female, age 91, right hemisphere 70.1
2686 Male, age 75, right hemisphere 60.6
Hippocampus, CA1
nTPM: 102.6
2749 Male, age 80, left hemisphere 165.6
1873 Female, age 85, both hemispheres 103.8
2045 Male, age 76, both hemispheres 90.4
2527 Male, age 74, both hemispheres 76.8
2082 Female, age 91, right hemisphere 76.4
Hippocampus, CA2
nTPM: 100.0
1963 Male, age 80, left hemisphere 138.3
1892 Male, age 76, both hemispheres 137.8
2249 Male, age 74, both hemispheres 89.1
1940 Female, age 85, left hemisphere 85.9
2437 Female, age 94, left hemisphere 80.4
2113 Female, age 91, right hemisphere 68.2
Hippocampus, CA3
nTPM: 89.0
2137 Male, age 80, left hemisphere 115.4
1867 Male, age 76, both hemispheres 109.8
2436 Male, age 74, both hemispheres 92.1
2620 Female, age 94, left hemisphere 84.8
1891 Female, age 85, both hemispheres 79.0
2861 Female, age 67, both hemispheres 52.7
Parahippocampal cortex
nTPM: 84.3
1850 Male, age 80, both hemispheres 132.1
1990 Female, age 91, right hemisphere 102.3
1933 Female, age 85, both hemispheres 99.4
2250 Female, age 67, right hemisphere 91.1
2018 Male, age 76, both hemispheres 88.3
2532 Female, age 72, left hemisphere 79.7
2245 Female, age 91, both hemispheres 79.1
2693 Female, age 94, both hemispheres 63.9
2622 Female, age 67, right hemisphere 55.6
2692 Male, age 74, both hemispheres 51.5
Perirhinal gyrus
nTPM: 118.6
1847 Female, age 91, left hemisphere 149.9
1794 Male, age 80, right hemisphere 147.8
1841 Female, age 85, right hemisphere 118.2
2848 Male, age 76, right hemisphere 90.3
2521 Female, age 94, right hemisphere 86.9
Subiculum
nTPM: 78.0
1977 Female, age 85, both hemispheres 98.7
1901 Male, age 80, both hemispheres 94.0
2042 Male, age 76, both hemispheres 71.7
2729 Female, age 91, right hemisphere 69.5
2438 Female, age 94, left hemisphere 67.2
2619 Male, age 74, both hemispheres 67.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 138.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 138.7
Samples: 255

Max nTPM: 284.9
Min nTPM: 47.6
Std nTPM: 50.8
Median nTPM: 133.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 284.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 277.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 277.0
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 275.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 272.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 270.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 267.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 254.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 253.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 249.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 240.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 96.4
FF:10169-103B7 60 years, female 129.8
FF:10153-102I9 76 years, female 62.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 150.8
Pig sample Sample description nTPM
Subiculum
nTPM: 128.9
Samples: 4

Max nTPM: 170.4
Min nTPM: 110.9
Sample A Female 170.4
Sample B Female 110.9
Sample C Male 122.2
Sample D Male 112.1
Dorsal hippocampus
nTPM: 150.8
Samples: 4

Max nTPM: 210.2
Min nTPM: 112.8
Sample A Female 210.2
Sample B Female 143.6
Sample C Male 136.6
Sample D Male 112.8
Entorhinal cortex
nTPM: 126.4
Samples: 4

Max nTPM: 139.7
Min nTPM: 103.3
Sample A Female 135.9
Sample B Female 126.6
Sample C Male 139.7
Sample D Male 103.3
Ventral hippocampus
nTPM: 148.4
Samples: 4

Max nTPM: 189.6
Min nTPM: 96.3
Sample A Female 167.0
Sample B Female 96.3
Sample C Male 189.6
Sample D Male 140.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 282.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 282.1
Samples: 4

Max nTPM: 300.9
Min nTPM: 252.7
Sample A Male 252.7
Sample B Male 300.3
Sample C Female 274.5
Sample D Female 300.9
Hippocampal formation
nTPM: 281.4
Samples: 4

Max nTPM: 302.3
Min nTPM: 269.2
Sample A Male 282.8
Sample B Male 269.2
Sample C Female 271.1
Sample D Female 302.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 13.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.7
71836889 Antisense, RP_051017_02_F07, Mouse strain C57BL/6J (56 days, male) 16.6
68743955 Antisense, RP_050203_01_H10, Mouse strain C57BL/6J (56 days, male) 10.8

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