On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
138.7
nTPM
HPA Brain:
119.1
nTPM
GTEx:
138.7
nTPM
FANTOM5:
96.4
Scaled Tags Per Million
Macaque:
85.3
nTPM
Mouse:
259.2
nTPM
Rat:
135.0
nTPM
Pig:
151.2
nTPM
HIPPOCAMPAL FORMATION - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - HIPPOCAMPAL FORMATION, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Dentate gyrus excitatory
c-2
CA1-3 Excitatory (VGLUT1) K
c-3
Inhibitory (GAD1/2) CXCL14+...
c-4
CA1-3 Excitatory (VGLUT1) K
c-5
Dentate gyrus excitatory (V...
c-6
Inhibitory (GAD1/2) LHX6+ T...
c-7
Inhibitory (GAD1/2) LHX6+ T...
c-8
CA1-3 Excitatory (VGLUT1) K
c-9
Dentate gyrus excitatory (V...
c-10
Dentate gyrus excitatory (V...
c-11
Dentate gyrus excitatory (V...
c-12
Dentate gyrus excitatory (V...
c-13
Inhibitory (GAD1/2) LAMP5+ ...
c-14
CA1-3 Excitatory (VGLUT1) K
c-15
Inhibitory (GAD1/2) CXCL14+...
c-16
CA1-3 Excitatory (VGLUT1) K
c-17
CA1-3 Excitatory (VGLUT1) K
c-18
CA1-3 Excitatory (VGLUT1) K
c-19
Dentate gyrus excitatory (V...
c-20
Inhibitory (GAD1/2) CXCL14+
c-21
Inhibitory (GAD1/2) CXCL14+
c-22
CA1-3 Excitatory (VGLUT1)
c-23
Excitatory (VGLUT1) FOXP2+
c-24
CA4 Excitatory (VGLUT1) KIT
c-25
Dentate gyrus excitatory (V...
c-26
Excitatory (VGLUT1) FOXP2+
c-27
CA1-3 Excitatory (VGLUT1) K
c-28
Excitatory (VGLUT1) RXFP1+
c-29
CA4 Excitatory (VGLUT1) KIT
c-30
CA1-3 Excitatory (VGLUT1) K
c-31
Excitatory (VGLUT1) PCP4+ F...
c-32
CA1-3 Excitatory (VGLUT1) K
c-33
Excitatory (VGLUT1/2)
c-34
Excitatory (VGLUT1/2) CUX2+
c-35
CA1-3 Excitatory (VGLUT1)
c-36
Excitatory (VGLUT1) CUX2+
c-37
Excitatory (VGLUT1) RORB+ F...
c-38
Excitatory (VGLUT1) RXFP1+ ...
c-39
CA1-3 Excitatory (VGLUT1)
c-40
Excitatory (VGLUT1)
c-41
Dentate gyrus excitatory (V...
c-42
CA1-3 Excitatory (VGLUT1)
c-43
Excitatory (VGLUT1) SATB2+
c-44
CA4 Excitatory (VGLUT1) KIT
c-45
Atypical neuron SOX11+
c-46
CA4 Excitatory (VGLUT1) KIT
c-47
Inhibitory (GAD1) LHX6+
c-48
Excitatory (VGLUT1) RXFP1+
c-49
CA4 Excitatory (VGLUT1) KIT
c-50
Atypical neuron PLCB4+ CDH4
c-51
Unassigned
c-52
Inhibitory (GAD2) DRD2+ PPP...
c-53
Dentate gyrus excitatory (V...
c-54
Dentate gyrus excitatory (V...
c-55
Excitatory (VGLUT1) RXFP1+
c-56
Excitatory (VGLUT1) PCP4+ F...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - HIPPOCAMPAL FORMATION, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocyte progenitor ...
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Microglia
c-5
Oligodendrocytes
c-6
Oligodendrocytes
c-7
Astrocytes
c-8
Astrocytes
c-9
Astrocytes
c-10
Astrocytes
c-11
Oligodendrocytes (TTR+)
c-12
Oligodendrocytes
c-13
Astrocytes
c-14
Ependymal cells
c-15
Astrocytes
c-16
Astrocytes (TTR+)
c-17
Oligodendrocyte progenitor ...
c-18
Vascular endothelial cells
c-19
Microglia (AIF1+)
c-20
Fibroblasts
c-21
Microglia (TTR+)
c-22
Immature oligodendrocytes
c-23
Pericytes
c-24
Macrophages
c-25
Lymphocytes
c-26
Choroid plexus epithelial c...
c-27
Macrophages and B-cells
c-28
Oligodendrocyte progenitor ...
c-29
Vascular smooth muscle cell
c-30
Doublets
c-31
Macrophages
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis
HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity
83778
Sample
Intensity
Hippocampal formation_01
63601
Hippocampal formation_02
67146
Hippocampal formation_03
33288
Hippocampal formation_04
140942
Hippocampal formation_05
100410
Hippocampal formation_06
174562
HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
119.1
Sample id
Sample description
nTPM
Dentate gyrus nTPM: 87.2
1927
Female, age 91, both hemispheres
111.0
2010
Male, age 76, both hemispheres
105.7
2530
Female, age 94, left hemisphere
88.0
2246
Female, age 85, both hemispheres
78.4
2528
Male, age 74, both hemispheres
72.6
2531
Female, age 67, both hemispheres
67.7
Entorhinal gyrus nTPM: 89.4
2764
Male, age 80, right hemisphere
120.0
1938
Female, age 85, left hemisphere
107.6
2613
Female, age 94, left hemisphere
91.4
1787
Male, age 76, left hemisphere
86.1
2117
Female, age 91, right hemisphere
70.5
2686
Male, age 75, right hemisphere
60.9
Hippocampus, CA1 nTPM: 103.1
2749
Male, age 80, left hemisphere
167.0
1873
Female, age 85, both hemispheres
103.9
2045
Male, age 76, both hemispheres
90.5
2527
Male, age 74, both hemispheres
77.1
2082
Female, age 91, right hemisphere
76.9
Hippocampus, CA2 nTPM: 100.3
1963
Male, age 80, left hemisphere
139.4
1892
Male, age 76, both hemispheres
137.9
2249
Male, age 74, both hemispheres
89.4
1940
Female, age 85, left hemisphere
86.1
2437
Female, age 94, left hemisphere
80.5
2113
Female, age 91, right hemisphere
68.6
Hippocampus, CA3 nTPM: 89.2
2137
Male, age 80, left hemisphere
116.2
1867
Male, age 76, both hemispheres
109.9
2436
Male, age 74, both hemispheres
92.4
2620
Female, age 94, left hemisphere
84.9
1891
Female, age 85, both hemispheres
79.1
2861
Female, age 67, both hemispheres
52.6
Parahippocampal cortex nTPM: 84.6
1850
Male, age 80, both hemispheres
133.1
1990
Female, age 91, right hemisphere
103.0
1933
Female, age 85, both hemispheres
99.6
2250
Female, age 67, right hemisphere
91.0
2018
Male, age 76, both hemispheres
88.4
2532
Female, age 72, left hemisphere
80.0
2245
Female, age 91, both hemispheres
79.6
2693
Female, age 94, both hemispheres
63.9
2622
Female, age 67, right hemisphere
55.5
2692
Male, age 74, both hemispheres
51.6
Perirhinal gyrus nTPM: 119.1
1847
Female, age 91, left hemisphere
150.7
1794
Male, age 80, right hemisphere
148.9
1841
Female, age 85, right hemisphere
118.3
2848
Male, age 76, right hemisphere
90.4
2521
Female, age 94, right hemisphere
87.0
Subiculum nTPM: 78.3
1977
Female, age 85, both hemispheres
98.9
1901
Male, age 80, both hemispheres
94.8
2042
Male, age 76, both hemispheres
71.8
2729
Female, age 91, right hemisphere
69.9
2619
Male, age 74, both hemispheres
67.4
2438
Female, age 94, left hemisphere
67.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
138.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 138.7
Samples: 255
Max nTPM: 284.9
Min nTPM: 47.6
Std nTPM: 50.8
Median nTPM: 133.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
284.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
277.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
277.0
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
275.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
272.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
270.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
267.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
254.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
253.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
249.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
240.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
239.9
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
236.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
228.1
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
225.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
224.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
223.4
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
222.8
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
221.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
220.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
219.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
218.7
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
210.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
209.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
204.5
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
204.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
203.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
203.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
201.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
199.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
198.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
197.0
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
195.4
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
194.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
194.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
192.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
192.1
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
190.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
190.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
189.3
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
188.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
185.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
184.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
184.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
184.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
183.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
182.2
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
182.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
180.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
179.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
179.4
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
179.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
176.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
175.1
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
173.3
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
173.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
172.5
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
172.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
172.0
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
171.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
170.6
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
170.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
170.3
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
169.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
168.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
167.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
167.4
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
167.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
166.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
166.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
165.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
165.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
164.4
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
164.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
163.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
163.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
162.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
162.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
162.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
162.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
161.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
160.9
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
160.5
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
159.8
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
159.2
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
159.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
158.8
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
158.7
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
156.3
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
155.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
155.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
155.5
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
154.3
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
153.4
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
153.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
152.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
152.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
152.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
152.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
150.8
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
150.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
150.1
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
150.1
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
149.3
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
149.0
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
147.3
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
147.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
145.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
144.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
144.2
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
143.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
142.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
142.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
142.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
141.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
140.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
139.7
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
138.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
138.3
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
138.1
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
137.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
136.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
136.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
136.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
136.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
134.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
134.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
133.0
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
132.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
132.3
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
131.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
130.3
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
130.2
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
129.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
129.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
129.7
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
129.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
128.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
128.8
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
128.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
127.8
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
127.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
125.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
125.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
125.0
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
124.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
124.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
124.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
124.1
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
122.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
121.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
121.8
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
121.0
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
121.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
120.8
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
120.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
119.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
119.6
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
119.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
119.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
118.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
118.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
115.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
114.2
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
114.2
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
113.6
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
113.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
113.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
112.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
112.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
111.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
110.9
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
110.7
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
110.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
108.7
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
108.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
108.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
107.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
107.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
106.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
106.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
105.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
105.6
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
105.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
103.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
103.5
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
103.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
102.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
101.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
101.2
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
100.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
100.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
99.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
98.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
97.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
97.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
97.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
96.3
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
95.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
95.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
94.3
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
92.0
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
91.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
90.3
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
89.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
89.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
89.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
89.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
88.7
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
87.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
86.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
86.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
86.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
85.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
84.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
83.9
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
82.2
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
81.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
80.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
79.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
79.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
78.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
78.0
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
77.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
77.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
76.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
73.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
73.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
73.1
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
72.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
72.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
72.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
72.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
71.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
71.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
71.7
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
71.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
71.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
71.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
70.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
69.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
69.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
68.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
67.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
65.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
65.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
65.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
62.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
61.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
58.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
56.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
56.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
56.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
55.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
47.6
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
85.3
Macaque sample
Sample description
nTPM
Subiculum nTPM: 67.3
Samples: 1
Max nTPM: 67.3
Min nTPM: 67.3
Sample A
67.3
Entorhinal cortex nTPM: 85.3
Samples: 2
Max nTPM: 97.8
Min nTPM: 72.8
Sample A
72.8
Sample B
97.8
Hippocampal formation nTPM: 82.5
Samples: 4
Max nTPM: 119.9
Min nTPM: 48.2
Sample A
67.6
Sample B
48.2
Sample C
94.2
Sample D
119.9
HIPPOCAMPAL FORMATION - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
151.2
Pig sample
Sample description
nTPM
Subiculum nTPM: 129.3
Samples: 4
Max nTPM: 171.1
Min nTPM: 111.2
Sample A
Female
171.1
Sample B
Female
111.2
Sample C
Male
122.5
Sample D
Male
112.2
Dorsal hippocampus nTPM: 151.2
Samples: 4
Max nTPM: 210.7
Min nTPM: 112.9
Sample A
Female
210.7
Sample B
Female
144.1
Sample C
Male
137.0
Sample D
Male
112.9
Entorhinal cortex nTPM: 126.8
Samples: 4
Max nTPM: 140.7
Min nTPM: 103.3
Sample A
Female
136.3
Sample B
Female
126.9
Sample C
Male
140.7
Sample D
Male
103.3
Ventral hippocampus nTPM: 148.8
Samples: 4
Max nTPM: 190.6
Min nTPM: 96.5
Sample A
Female
167.5
Sample B
Female
96.5
Sample C
Male
190.6
Sample D
Male
140.7
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
259.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 235.3
Samples: 4
Max nTPM: 253.6
Min nTPM: 223.0
Sample A
223.0
Sample B
233.2
Sample C
253.6
Sample D
231.5
Hippocampal formation nTPM: 259.2
Samples: 4
Max nTPM: 311.1
Min nTPM: 234.0
Sample A
311.1
Sample B
241.5
Sample C
250.2
Sample D
234.0
HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
135.0
Rat sample
Sample description
nTPM
Entorhinal cortex nTPM: 135.0
Samples: 4
Max nTPM: 146.2
Min nTPM: 119.6
Sample A
146.2
Sample A
139.8
Sample A
119.6
Sample B
134.4
Ventral hippocampus nTPM: 134.1
Samples: 4
Max nTPM: 141.3
Min nTPM: 122.7
Sample A
141.3
Sample A
122.7
Sample A
135.2
Sample A
137.2
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
