MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:80.9 nTPM
HPA Brain:144.7 nTPM
GTEx:80.9 nTPM
FANTOM5:369.1 Scaled Tags Per Million
Pig:156.1 nTPM
Mouse:235.4 nTPM
Allen mouse:17.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 144.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.2
2411 Female, age 72, unknown 121.0
2019 Male, age 18, unknown 111.1
2666 Male, age 74, left hemisphere 109.7
1870 Female, age 42, unknown 106.4
1827 Male, age 72, unknown 94.5
1833 Male, age 53, unknown 88.1
2828 Female, age 72, unknown 86.8
1830 Male, age 51, unknown 85.5
2219 Male, age 76, both hemispheres 57.9
2586 Male, age 75, left hemisphere 50.5
Dorsal raphe nucleus
nTPM: 114.9
2298 Female, age 72, unknown 178.6
2047 Male, age 72, unknown 108.6
1828 Male, age 53, unknown 106.7
2016 Female, age 72, unknown 93.1
2750 Male, age 76, both hemispheres 87.7
Inferior colliculus
nTPM: 97.0
2097 Female, age 72, unknown 125.9
1890 Male, age 53, unknown 90.9
1848 Female, age 42, unknown 90.5
2849 Male, age 72, unknown 80.6
Median raphe nucleus
nTPM: 138.0
2220 Male, age 76, midline 138.0
Periaquaductal grey, anterior
nTPM: 111.9
1947 Male, age 18, unknown 121.8
2502 Female, age 75, unknown 114.9
1795 Male, age 51, unknown 99.0
Periaquaductal grey, dorsal
nTPM: 103.2
2850 Male, age 76, both hemispheres 146.7
1840 Male, age 53, unknown 103.3
2464 Female, age 72, unknown 82.0
1831 Male, age 72, unknown 80.7
Periaquaductal grey, lateral
nTPM: 144.7
2272 Male, age 74, both hemispheres 200.3
2140 Male, age 76, both hemispheres 140.2
2053 Male, age 18, unknown 93.5
Pretectal area
nTPM: 116.8
2273 Male, age 74, both hemispheres 229.8
2224 Female, age 72, unknown 134.7
2007 Male, age 72, unknown 117.9
1944 Female, age 72, unknown 111.2
1817 Female, age 42, unknown 109.9
1816 Male, age 51, unknown 106.6
2667 Female, age 75, unknown 106.0
1815 Male, age 53, unknown 99.8
2407 Male, age 75, both hemispheres 99.1
2825 Male, age 18, unknown 96.6
2316 Male, age 76, right hemisphere 73.1
Red nucleus
nTPM: 84.2
2725 Female, age 75, unknown 114.0
1821 Female, age 72, unknown 100.5
1954 Female, age 42, unknown 98.5
2785 Male, age 18, unknown 97.0
1904 Male, age 53, unknown 91.3
1865 Male, age 51, unknown 90.7
2503 Female, age 72, unknown 90.0
2227 Male, age 72, unknown 81.9
2769 Male, age 72, unknown 80.6
2584 Male, age 75, left hemisphere 74.0
2823 Male, age 76, right hemisphere 57.0
2588 Male, age 74, left hemisphere 34.5
Substantia nigra
nTPM: 93.1
1916 Female, age 42, unknown 129.5
2241 Male, age 72, unknown 120.8
1889 Female, age 72, unknown 112.6
1851 Male, age 51, unknown 105.9
2409 Female, age 72, unknown 97.8
1941 Male, age 53, unknown 93.6
2699 Male, age 18, unknown 75.5
2590 Female, age 75, unknown 73.4
2583 Male, age 75, right hemisphere 69.3
2665 Male, age 74, both hemispheres 52.9
Superior colliculus
nTPM: 90.0
2587 Male, age 74, left hemisphere 144.0
2261 Male, age 18, unknown 107.8
2087 Female, age 72, unknown 104.6
1796 Male, age 53, unknown 97.5
1913 Female, age 42, unknown 87.5
1995 Male, age 72, unknown 85.7
1839 Male, age 51, unknown 81.1
2668 Female, age 75, unknown 77.6
1895 Male, age 76, right hemisphere 63.4
2664 Male, age 75, both hemispheres 51.2
Ventral tegmental area
nTPM: 98.2
2410 Female, age 72, unknown 124.6
1915 Female, age 42, unknown 109.0
1942 Male, age 51, unknown 96.3
2021 Male, age 53, unknown 88.2
2223 Female, age 72, unknown 86.2
2218 Male, age 76, both hemispheres 84.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 80.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.9
Samples: 183

Max nTPM: 395.4
Min nTPM: 22.0
Std nTPM: 56.5
Median nTPM: 64.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 395.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 305.0
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 291.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 287.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 281.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 275.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 239.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 235.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 190.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 186.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 184.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 369.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 369.1
FF:10158-103A5 76 years, female 369.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 156.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 131.9
Samples: 4

Max nTPM: 165.0
Min nTPM: 109.0
Sample A Female 165.0
Sample B Female 117.0
Sample C Male 136.4
Sample D Male 109.0
Midbrain
nTPM: 141.0
Samples: 4

Max nTPM: 150.5
Min nTPM: 125.0
Sample A Female 142.1
Sample B Female 125.0
Sample C Male 146.2
Sample D Male 150.5
Periaqueductal gray
nTPM: 147.5
Samples: 3

Max nTPM: 166.0
Min nTPM: 138.1
Sample B Female 138.3
Sample C Male 138.1
Sample D Male 166.0
Superior colliculi
nTPM: 156.1
Samples: 4

Max nTPM: 167.1
Min nTPM: 145.2
Sample A Female 166.6
Sample B Female 167.1
Sample C Male 145.5
Sample D Male 145.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 235.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 235.5
Samples: 4

Max nTPM: 268.9
Min nTPM: 192.1
Sample A Male 192.1
Sample B Male 219.0
Sample C Female 268.9
Sample D Female 261.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.6
69735138 Antisense, RP_050503_02_B08, Mouse strain C57BL/6J (56 days, male) 17.6

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