On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
94.6
nTPM
HPA Brain:
173.4
nTPM
GTEx:
94.6
nTPM
FANTOM5:
177.8
Scaled Tags Per Million
Macaque:
146.1
nTPM
Mouse:
82.7
nTPM
Rat:
148.3
nTPM
Pig:
140.7
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
353567
Sample
Intensity
Spinal cord_01
455808
Spinal cord_02
431740
Spinal cord_03
307079
Spinal cord_04
351658
Spinal cord_05
228444
Spinal cord_06
507784
Spinal cord_07
287921
Spinal cord_08
355476
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
173.4
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 158.4
2193
Male, age 75, both hemispheres
219.1
2819
Male, age 47, both hemispheres
169.9
2734
Male, age 80, both hemispheres
127.1
2818
Female, age 79, both hemispheres
117.3
Cervical spinal cord, central gray nTPM: 128.4
1981
Female, age 72, midline
193.9
2565
Male, age 75, midline
137.1
2048
Male, age 55, midline
113.7
2194
Female, age 79, both hemispheres
101.8
2816
Male, age 47, midline
95.5
Cervical spinal cord, dorsal horn nTPM: 150.8
2069
Male, age 47, both hemispheres
199.8
2173
Female, age 72, unknown
195.0
2296
Male, age 66, both hemispheres
172.8
2721
Male, age 90, both hemispheres
131.8
1877
Male, age 55, unknown
104.8
2297
Male, age 75, both hemispheres
100.8
Cervical spinal cord, ventral horn nTPM: 137.7
2809
Male, age 90, both hemispheres
211.8
2098
Female, age 72, unknown
172.9
2480
Male, age 75, both hemispheres
165.1
2068
Male, age 55, unknown
113.8
2295
Male, age 66, both hemispheres
88.8
2820
Female, age 79, both hemispheres
74.2
Dorsal funiculus (white matter) nTPM: 146.3
2128
Male, age 75, both hemispheres
231.7
2812
Male, age 66, both hemispheres
145.2
2064
Female, age 79, both hemispheres
139.4
2817
Male, age 47, both hemispheres
119.3
2810
Male, age 90, both hemispheres
95.8
Lateral funiculus (white matter) nTPM: 173.4
2294
Male, age 66, both hemispheres
202.4
2099
Male, age 90, both hemispheres
168.7
2192
Male, age 75, both hemispheres
164.2
2094
Female, age 79, both hemispheres
158.4
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
94.6
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 94.6
Samples: 204
Max nTPM: 362.5
Min nTPM: 22.3
Std nTPM: 60.1
Median nTPM: 79.0
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
362.5
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
351.2
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
333.2
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
303.8
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
289.4
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
285.9
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
277.6
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
276.4
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
258.9
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
254.7
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
229.9
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
220.4
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
214.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
210.1
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
208.2
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
201.9
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
188.5
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
183.8
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
166.0
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
164.9
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
164.5
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
161.2
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
157.7
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
156.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
154.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
152.7
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
138.0
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
130.0
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
126.0
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
125.7
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
119.4
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
119.1
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
118.1
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
115.4
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
115.1
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
114.4
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
112.9
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
112.8
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
112.0
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
111.8
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
111.6
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
111.5
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
111.5
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
109.1
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
108.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
108.2
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
107.6
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
107.2
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
107.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
106.6
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
106.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
105.7
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
102.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
102.0
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
100.6
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
99.8
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
98.4
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
97.6
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
97.5
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
97.3
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
96.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
96.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
96.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
96.6
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
96.1
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
95.6
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
93.4
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
93.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
91.5
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
91.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
91.1
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
91.0
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
90.4
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
90.1
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
89.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
89.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
88.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
88.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
87.1
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
86.4
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
86.3
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
85.9
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
85.9
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
85.9
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
85.5
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
84.5
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
84.3
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
83.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
83.1
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
82.7
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
82.7
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
82.6
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
82.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
81.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
81.5
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
80.4
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
79.7
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
79.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
79.3
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
79.1
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
79.1
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
79.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
78.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
78.9
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
78.3
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
77.9
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
76.9
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
76.7
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
76.6
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
76.5
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
76.5
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
76.2
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
76.1
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
75.3
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
75.2
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
74.5
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
74.5
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
74.0
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
73.4
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
73.3
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
73.1
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
73.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
72.8
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
72.6
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
72.5
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
72.4
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
71.8
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
71.8
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
70.9
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
70.6
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
70.6
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
70.2
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
69.7
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
69.4
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
67.1
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
67.0
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
66.8
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
66.8
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
66.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
65.7
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
65.6
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
65.3
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
64.0
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
63.5
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
63.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
63.1
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
62.5
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
62.1
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
61.6
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
60.8
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
60.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
59.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
58.9
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
58.5
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
58.1
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
58.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
57.7
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
56.6
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
56.5
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
56.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
55.9
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
55.7
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
54.9
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
54.8
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
54.3
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
54.1
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
53.9
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
53.4
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
52.5
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
52.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
51.8
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
51.4
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
51.1
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
50.6
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
50.1
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
49.8
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
49.7
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
49.1
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
48.8
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
47.6
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
47.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
46.8
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
46.3
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
45.7
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
45.5
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
43.6
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
43.0
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
42.7
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
42.3
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
42.0
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
41.8
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
41.2
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
40.9
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
39.4
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
38.8
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
38.5
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
35.7
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
35.2
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
34.7
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
33.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
30.5
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
27.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
23.8
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
22.3
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
146.1
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 120.1
Samples: 2
Max nTPM: 147.6
Min nTPM: 92.5
Sample A
92.5
Sample B
147.6
Ventral spinal cord nTPM: 146.1
Samples: 1
Max nTPM: 146.1
Min nTPM: 146.1
Sample A
146.1
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
140.7
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 131.9
Samples: 4
Max nTPM: 145.7
Min nTPM: 111.5
Sample A
Female
127.4
Sample B
Female
111.5
Sample C
Male
145.7
Sample D
Male
142.9
Ventral spinal cord nTPM: 140.7
Samples: 4
Max nTPM: 147.7
Min nTPM: 133.0
Sample A
Female
147.7
Sample B
Female
135.5
Sample C
Male
146.5
Sample D
Male
133.0
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.7
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 82.7
Samples: 4
Max nTPM: 92.8
Min nTPM: 71.1
Sample A
85.5
Sample B
71.1
Sample C
81.2
Sample D
92.8
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
148.3
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 148.3
Samples: 4
Max nTPM: 161.5
Min nTPM: 135.4
Sample A
161.5
Sample A
156.6
Sample A
135.4
Sample A
139.5
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The Human Protein Atlas project is funded
