A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
209.7
nTPM
Monaco:
3256.7
nTPM
Schmiedel:
280.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
209.7
HPA sample
nTPM
Memory B-cell nTPM: 209.7
Samples: 6
Max nTPM: 266.5
Min nTPM: 130.6
P10809_1017
266.5
P10809_1025
238.3
P10809_1044
130.6
P10809_1063
159.6
P10809_1092
254.0
P10809_1105
209.0
Naive B-cell nTPM: 174.8
Samples: 6
Max nTPM: 353.0
Min nTPM: 82.0
P10809_1011
82.0
P10809_1029
180.8
P10809_1048
353.0
P10809_1067
118.8
P10809_1091
174.3
P10809_1104
140.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3256.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 370.2
Samples: 4
Max nTPM: 495.7
Min nTPM: 302.2
RHH5310_R3677
495.7
RHH5218_R3590
326.8
RHH5247_R3619
302.2
RHH5276_R3648
356.1
Naive B-cell nTPM: 185.1
Samples: 4
Max nTPM: 316.3
Min nTPM: 103.4
RHH5308_R3675
122.8
RHH5216_R3588
316.3
RHH5245_R3617
198.0
RHH5274_R3646
103.4
Non-switched memory B-cell nTPM: 225.9
Samples: 4
Max nTPM: 290.0
Min nTPM: 151.2
RHH5309_R3676
178.9
RHH5217_R3589
290.0
RHH5246_R3618
283.5
RHH5275_R3647
151.2
Plasmablast nTPM: 3256.6
Samples: 4
Max nTPM: 3628.3
Min nTPM: 2995.7
RHH5312_R3679
3226.5
RHH5220_R3592
3628.3
RHH5249_R3621
2995.7
RHH5278_R3650
3176.0
Switched memory B-cell nTPM: 215.6
Samples: 4
Max nTPM: 266.3
Min nTPM: 147.9
RHH5311_R3678
147.9
RHH5219_R3591
266.3
RHH5248_R3620
235.8
RHH5277_R3649
212.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
280.9
Schmiedel sample id
TPM
Naive B-cell TPM: 280.9
Samples: 91
Max TPM: 439.3
Min TPM: 147.1
B_CELL_NAIVE_1
439.3
B_CELL_NAIVE_2
423.1
B_CELL_NAIVE_3
414.1
B_CELL_NAIVE_4
409.8
B_CELL_NAIVE_5
400.8
B_CELL_NAIVE_6
394.0
B_CELL_NAIVE_7
354.5
B_CELL_NAIVE_8
354.4
B_CELL_NAIVE_9
351.8
B_CELL_NAIVE_10
346.2
B_CELL_NAIVE_11
343.2
B_CELL_NAIVE_12
341.3
B_CELL_NAIVE_13
341.0
B_CELL_NAIVE_14
339.0
B_CELL_NAIVE_15
336.8
B_CELL_NAIVE_16
325.9
B_CELL_NAIVE_17
325.0
B_CELL_NAIVE_18
320.6
B_CELL_NAIVE_19
319.6
B_CELL_NAIVE_20
316.6
B_CELL_NAIVE_21
314.8
B_CELL_NAIVE_22
310.9
B_CELL_NAIVE_23
309.0
B_CELL_NAIVE_24
306.0
B_CELL_NAIVE_25
304.2
B_CELL_NAIVE_26
303.7
B_CELL_NAIVE_27
301.6
B_CELL_NAIVE_28
300.5
B_CELL_NAIVE_29
299.1
B_CELL_NAIVE_30
296.2
B_CELL_NAIVE_31
296.2
B_CELL_NAIVE_32
295.5
B_CELL_NAIVE_33
294.9
B_CELL_NAIVE_34
294.1
B_CELL_NAIVE_35
291.4
B_CELL_NAIVE_36
291.0
B_CELL_NAIVE_37
288.9
B_CELL_NAIVE_38
285.3
B_CELL_NAIVE_39
285.2
B_CELL_NAIVE_40
284.5
B_CELL_NAIVE_41
284.0
B_CELL_NAIVE_42
283.6
B_CELL_NAIVE_43
282.6
B_CELL_NAIVE_44
282.5
B_CELL_NAIVE_45
281.0
B_CELL_NAIVE_46
279.4
B_CELL_NAIVE_47
276.6
B_CELL_NAIVE_48
273.2
B_CELL_NAIVE_49
271.3
B_CELL_NAIVE_50
269.7
B_CELL_NAIVE_51
268.6
B_CELL_NAIVE_52
268.2
B_CELL_NAIVE_53
267.7
B_CELL_NAIVE_54
266.9
B_CELL_NAIVE_55
264.7
B_CELL_NAIVE_56
262.4
B_CELL_NAIVE_57
261.6
B_CELL_NAIVE_58
261.5
B_CELL_NAIVE_59
261.4
B_CELL_NAIVE_60
261.2
B_CELL_NAIVE_61
259.0
B_CELL_NAIVE_62
258.1
B_CELL_NAIVE_63
256.9
B_CELL_NAIVE_64
254.8
B_CELL_NAIVE_65
253.2
B_CELL_NAIVE_66
252.7
B_CELL_NAIVE_67
251.8
B_CELL_NAIVE_68
248.3
B_CELL_NAIVE_69
247.1
B_CELL_NAIVE_70
246.9
B_CELL_NAIVE_71
246.5
B_CELL_NAIVE_72
245.7
B_CELL_NAIVE_73
239.6
B_CELL_NAIVE_74
239.3
B_CELL_NAIVE_75
226.0
B_CELL_NAIVE_76
225.9
B_CELL_NAIVE_77
225.3
B_CELL_NAIVE_78
224.7
B_CELL_NAIVE_79
222.8
B_CELL_NAIVE_80
220.0
B_CELL_NAIVE_81
216.6
B_CELL_NAIVE_82
216.5
B_CELL_NAIVE_83
215.7
B_CELL_NAIVE_84
213.6
B_CELL_NAIVE_85
212.8
B_CELL_NAIVE_86
196.1
B_CELL_NAIVE_87
189.1
B_CELL_NAIVE_88
180.4
B_CELL_NAIVE_89
179.2
B_CELL_NAIVE_90
168.8
B_CELL_NAIVE_91
147.1
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