A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
364.1
nTPM
Monaco:
605.7
nTPM
Schmiedel:
734.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
364.1
HPA sample
nTPM
NK-cell nTPM: 364.1
Samples: 6
Max nTPM: 465.3
Min nTPM: 213.4
P10809_1013
213.4
P10809_1033
465.3
P10809_1052
395.4
P10809_1071
309.1
P10809_1093
429.9
P10809_1103
371.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
605.7
Monaco sample
nTPM
NK-cell nTPM: 605.7
Samples: 4
Max nTPM: 846.0
Min nTPM: 484.9
RHH5316_R3683
484.9
RHH5224_R3596
846.0
RHH5253_R3625
592.2
RHH5282_R3654
499.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
734.6
Schmiedel sample id
TPM
NK-cell TPM: 734.6
Samples: 90
Max TPM: 1065.8
Min TPM: 515.1
NK_1
1065.8
NK_2
998.2
NK_3
997.3
NK_4
997.3
NK_5
974.9
NK_6
936.4
NK_7
931.9
NK_8
921.6
NK_9
912.0
NK_10
893.1
NK_11
887.4
NK_12
886.6
NK_13
881.1
NK_14
871.3
NK_15
864.4
NK_16
847.6
NK_17
846.9
NK_18
844.9
NK_19
825.5
NK_20
822.6
NK_21
815.7
NK_22
815.5
NK_23
814.0
NK_24
807.8
NK_25
798.2
NK_26
794.4
NK_27
790.6
NK_28
780.5
NK_29
773.5
NK_30
772.6
NK_31
772.2
NK_32
768.3
NK_33
763.2
NK_34
754.2
NK_35
753.7
NK_36
750.7
NK_37
747.4
NK_38
744.8
NK_39
743.8
NK_40
731.4
NK_41
731.4
NK_42
727.5
NK_43
727.4
NK_44
726.4
NK_45
723.0
NK_46
722.2
NK_47
721.8
NK_48
721.5
NK_49
715.7
NK_50
714.5
NK_51
712.6
NK_52
706.9
NK_53
694.2
NK_54
691.3
NK_55
675.5
NK_56
673.8
NK_57
672.9
NK_58
671.6
NK_59
669.9
NK_60
667.5
NK_61
664.3
NK_62
663.8
NK_63
662.2
NK_64
662.0
NK_65
656.3
NK_66
652.6
NK_67
642.4
NK_68
642.3
NK_69
640.4
NK_70
639.6
NK_71
635.0
NK_72
624.8
NK_73
623.5
NK_74
620.4
NK_75
617.5
NK_76
617.0
NK_77
613.7
NK_78
604.5
NK_79
599.9
NK_80
599.8
NK_81
592.1
NK_82
591.8
NK_83
587.5
NK_84
579.4
NK_85
574.7
NK_86
571.5
NK_87
555.9
NK_88
555.3
NK_89
539.1
NK_90
515.1
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