A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
366.6
nTPM
Monaco:
471.1
nTPM
Schmiedel:
366.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
366.6
HPA sample
nTPM
Classical monocyte nTPM: 366.7
Samples: 6
Max nTPM: 525.0
Min nTPM: 236.8
P10809_1003
379.6
P10809_1020
525.0
P10809_1039
420.9
P10809_1058
236.8
P10809_1080
333.3
P10809_1107
304.3
Intermediate monocyte nTPM: 361.9
Samples: 6
Max nTPM: 562.6
Min nTPM: 286.2
P10809_1004
294.2
P10809_1023
366.7
P10809_1042
368.9
P10809_1061
562.6
P10809_1081
286.2
P10809_1108
292.9
Non-classical monocyte nTPM: 253.6
Samples: 5
Max nTPM: 346.8
Min nTPM: 178.5
P10809_1005
208.0
P10809_1053
317.2
P10809_1072
346.8
P10809_1082
178.5
P10809_1109
217.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
471.1
Monaco sample
nTPM
Classical monocyte nTPM: 471.1
Samples: 4
Max nTPM: 633.6
Min nTPM: 361.7
RHH5313_R3680
455.0
RHH5221_R3593
633.6
RHH5250_R3622
434.0
RHH5279_R3651
361.7
Intermediate monocyte nTPM: 329.9
Samples: 4
Max nTPM: 414.6
Min nTPM: 283.1
RHH5314_R3681
283.1
RHH5222_R3594
414.6
RHH5251_R3623
286.7
RHH5280_R3652
335.1
Non-classical monocyte nTPM: 313.9
Samples: 4
Max nTPM: 357.0
Min nTPM: 264.2
RHH5315_R3682
316.7
RHH5223_R3595
357.0
RHH5252_R3624
317.7
RHH5281_R3653
264.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
366.9
Schmiedel sample id
TPM
Classical monocyte TPM: 366.9
Samples: 91
Max TPM: 808.1
Min TPM: 251.3
MONOCYTES_1
808.1
MONOCYTES_2
768.6
MONOCYTES_3
563.9
MONOCYTES_4
492.1
MONOCYTES_5
472.9
MONOCYTES_6
461.6
MONOCYTES_7
455.3
MONOCYTES_8
448.8
MONOCYTES_9
447.4
MONOCYTES_10
447.0
MONOCYTES_11
438.5
MONOCYTES_12
434.4
MONOCYTES_13
433.1
MONOCYTES_14
432.5
MONOCYTES_15
430.0
MONOCYTES_16
420.7
MONOCYTES_17
419.0
MONOCYTES_18
407.5
MONOCYTES_19
405.1
MONOCYTES_20
403.6
MONOCYTES_21
402.0
MONOCYTES_22
399.0
MONOCYTES_23
398.7
MONOCYTES_24
397.2
MONOCYTES_25
396.3
MONOCYTES_26
394.7
MONOCYTES_27
394.3
MONOCYTES_28
393.2
MONOCYTES_29
392.6
MONOCYTES_30
379.6
MONOCYTES_31
378.7
MONOCYTES_32
373.4
MONOCYTES_33
373.3
MONOCYTES_34
373.0
MONOCYTES_35
370.2
MONOCYTES_36
369.4
MONOCYTES_37
369.3
MONOCYTES_38
367.0
MONOCYTES_39
365.6
MONOCYTES_40
365.1
MONOCYTES_41
364.3
MONOCYTES_42
361.9
MONOCYTES_43
361.1
MONOCYTES_44
360.1
MONOCYTES_45
355.4
MONOCYTES_46
354.5
MONOCYTES_47
354.3
MONOCYTES_48
351.3
MONOCYTES_49
349.9
MONOCYTES_50
349.5
MONOCYTES_51
348.4
MONOCYTES_52
347.0
MONOCYTES_53
345.3
MONOCYTES_54
342.3
MONOCYTES_55
341.2
MONOCYTES_56
341.1
MONOCYTES_57
340.5
MONOCYTES_58
338.5
MONOCYTES_59
336.5
MONOCYTES_60
335.9
MONOCYTES_61
335.4
MONOCYTES_62
330.0
MONOCYTES_63
323.9
MONOCYTES_64
323.7
MONOCYTES_65
321.9
MONOCYTES_66
319.2
MONOCYTES_67
318.3
MONOCYTES_68
317.1
MONOCYTES_69
314.9
MONOCYTES_70
310.4
MONOCYTES_71
310.0
MONOCYTES_72
309.1
MONOCYTES_73
308.8
MONOCYTES_74
308.0
MONOCYTES_75
304.5
MONOCYTES_76
301.4
MONOCYTES_77
300.8
MONOCYTES_78
298.3
MONOCYTES_79
296.9
MONOCYTES_80
293.8
MONOCYTES_81
292.5
MONOCYTES_82
286.9
MONOCYTES_83
279.1
MONOCYTES_84
277.5
MONOCYTES_85
261.5
MONOCYTES_86
254.6
MONOCYTES_87
254.2
MONOCYTES_88
254.0
MONOCYTES_89
253.1
MONOCYTES_90
252.9
MONOCYTES_91
251.3
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Non-classical monocyte TPM: 230.2
Samples: 90
Max TPM: 386.7
Min TPM: 152.3
M2_1
386.7
M2_2
372.5
M2_3
317.2
M2_4
310.4
M2_5
310.1
M2_6
300.6
M2_7
292.8
M2_8
287.9
M2_9
285.6
M2_10
277.3
M2_11
275.0
M2_12
273.6
M2_13
271.2
M2_14
268.0
M2_15
265.2
M2_16
265.0
M2_17
262.1
M2_18
261.6
M2_19
256.9
M2_20
254.7
M2_21
253.3
M2_22
253.1
M2_23
251.4
M2_24
251.4
M2_25
251.0
M2_26
249.4
M2_27
249.2
M2_28
248.5
M2_29
244.0
M2_30
242.5
M2_31
240.6
M2_32
240.5
M2_33
240.4
M2_34
239.1
M2_35
237.3
M2_36
236.0
M2_37
235.8
M2_38
232.4
M2_39
232.1
M2_40
231.5
M2_41
230.6
M2_42
230.3
M2_43
229.0
M2_44
227.1
M2_45
225.5
M2_46
223.9
M2_47
222.0
M2_48
220.9
M2_49
219.9
M2_50
219.2
M2_51
218.7
M2_52
217.7
M2_53
215.9
M2_54
214.8
M2_55
214.8
M2_56
212.6
M2_57
212.1
M2_58
210.7
M2_59
210.3
M2_60
209.7
M2_61
209.5
M2_62
209.2
M2_63
208.9
M2_64
204.3
M2_65
204.0
M2_66
202.5
M2_67
201.7
M2_68
197.9
M2_69
196.9
M2_70
196.9
M2_71
196.1
M2_72
191.7
M2_73
191.4
M2_74
189.7
M2_75
188.4
M2_76
187.4
M2_77
186.8
M2_78
186.4
M2_79
185.9
M2_80
185.0
M2_81
183.7
M2_82
183.5
M2_83
182.1
M2_84
179.8
M2_85
179.4
M2_86
178.6
M2_87
177.9
M2_88
173.3
M2_89
169.8
M2_90
152.3
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