A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.4
nTPM
Monaco:
20.6
nTPM
Schmiedel:
167.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.4
HPA sample
nTPM
Memory B-cell nTPM: 8.5
Samples: 6
Max nTPM: 10.7
Min nTPM: 6.4
P10809_1017
6.4
P10809_1025
9.7
P10809_1044
6.6
P10809_1063
8.7
P10809_1092
8.9
P10809_1105
10.7
Naive B-cell nTPM: 10.4
Samples: 6
Max nTPM: 12.8
Min nTPM: 7.3
P10809_1011
10.1
P10809_1029
12.0
P10809_1048
7.3
P10809_1067
12.5
P10809_1091
7.5
P10809_1104
12.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 12.2
Samples: 4
Max nTPM: 17.2
Min nTPM: 0.4
RHH5310_R3677
17.2
RHH5218_R3590
0.4
RHH5247_R3619
16.4
RHH5276_R3648
14.9
Naive B-cell nTPM: 17.5
Samples: 4
Max nTPM: 20.6
Min nTPM: 15.6
RHH5308_R3675
15.6
RHH5216_R3588
17.6
RHH5245_R3617
20.6
RHH5274_R3646
16.3
Non-switched memory B-cell nTPM: 14.0
Samples: 4
Max nTPM: 24.2
Min nTPM: 1.7
RHH5309_R3676
24.2
RHH5217_R3589
1.7
RHH5246_R3618
22.4
RHH5275_R3647
7.9
Plasmablast nTPM: 5.9
Samples: 4
Max nTPM: 9.4
Min nTPM: 3.3
RHH5312_R3679
9.4
RHH5220_R3592
6.3
RHH5249_R3621
4.4
RHH5278_R3650
3.3
Switched memory B-cell nTPM: 20.6
Samples: 4
Max nTPM: 29.9
Min nTPM: 9.5
RHH5311_R3678
29.9
RHH5219_R3591
26.8
RHH5248_R3620
16.2
RHH5277_R3649
9.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
167.2
Schmiedel sample id
TPM
Naive B-cell TPM: 167.2
Samples: 91
Max TPM: 242.0
Min TPM: 95.5
B_CELL_NAIVE_1
242.0
B_CELL_NAIVE_2
241.8
B_CELL_NAIVE_3
223.6
B_CELL_NAIVE_4
221.5
B_CELL_NAIVE_5
217.9
B_CELL_NAIVE_6
216.1
B_CELL_NAIVE_7
214.4
B_CELL_NAIVE_8
211.2
B_CELL_NAIVE_9
210.9
B_CELL_NAIVE_10
210.0
B_CELL_NAIVE_11
207.8
B_CELL_NAIVE_12
207.5
B_CELL_NAIVE_13
207.0
B_CELL_NAIVE_14
206.5
B_CELL_NAIVE_15
206.3
B_CELL_NAIVE_16
205.6
B_CELL_NAIVE_17
202.4
B_CELL_NAIVE_18
201.9
B_CELL_NAIVE_19
199.3
B_CELL_NAIVE_20
197.9
B_CELL_NAIVE_21
197.2
B_CELL_NAIVE_22
192.5
B_CELL_NAIVE_23
189.0
B_CELL_NAIVE_24
188.1
B_CELL_NAIVE_25
187.6
B_CELL_NAIVE_26
187.5
B_CELL_NAIVE_27
186.3
B_CELL_NAIVE_28
185.4
B_CELL_NAIVE_29
184.6
B_CELL_NAIVE_30
184.2
B_CELL_NAIVE_31
182.0
B_CELL_NAIVE_32
180.3
B_CELL_NAIVE_33
179.9
B_CELL_NAIVE_34
179.3
B_CELL_NAIVE_35
175.8
B_CELL_NAIVE_36
175.7
B_CELL_NAIVE_37
174.5
B_CELL_NAIVE_38
174.1
B_CELL_NAIVE_39
173.2
B_CELL_NAIVE_40
172.7
B_CELL_NAIVE_41
172.5
B_CELL_NAIVE_42
172.4
B_CELL_NAIVE_43
172.4
B_CELL_NAIVE_44
171.7
B_CELL_NAIVE_45
171.7
B_CELL_NAIVE_46
171.3
B_CELL_NAIVE_47
168.8
B_CELL_NAIVE_48
168.5
B_CELL_NAIVE_49
165.0
B_CELL_NAIVE_50
164.4
B_CELL_NAIVE_51
163.8
B_CELL_NAIVE_52
163.8
B_CELL_NAIVE_53
163.7
B_CELL_NAIVE_54
162.6
B_CELL_NAIVE_55
162.1
B_CELL_NAIVE_56
161.6
B_CELL_NAIVE_57
159.3
B_CELL_NAIVE_58
158.3
B_CELL_NAIVE_59
158.0
B_CELL_NAIVE_60
157.7
B_CELL_NAIVE_61
157.2
B_CELL_NAIVE_62
155.1
B_CELL_NAIVE_63
154.5
B_CELL_NAIVE_64
154.0
B_CELL_NAIVE_65
153.0
B_CELL_NAIVE_66
152.9
B_CELL_NAIVE_67
152.2
B_CELL_NAIVE_68
150.1
B_CELL_NAIVE_69
149.9
B_CELL_NAIVE_70
140.5
B_CELL_NAIVE_71
137.5
B_CELL_NAIVE_72
135.9
B_CELL_NAIVE_73
135.3
B_CELL_NAIVE_74
133.2
B_CELL_NAIVE_75
133.0
B_CELL_NAIVE_76
129.8
B_CELL_NAIVE_77
128.3
B_CELL_NAIVE_78
125.4
B_CELL_NAIVE_79
118.7
B_CELL_NAIVE_80
118.6
B_CELL_NAIVE_81
117.1
B_CELL_NAIVE_82
116.7
B_CELL_NAIVE_83
112.8
B_CELL_NAIVE_84
111.4
B_CELL_NAIVE_85
110.5
B_CELL_NAIVE_86
108.6
B_CELL_NAIVE_87
106.9
B_CELL_NAIVE_88
104.9
B_CELL_NAIVE_89
102.6
B_CELL_NAIVE_90
101.1
B_CELL_NAIVE_91
95.5
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