A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.3
nTPM
Monaco:
5.5
nTPM
Schmiedel:
25.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
HPA sample
nTPM
Classical monocyte nTPM: 1.2
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.7
P10809_1003
0.8
P10809_1020
1.4
P10809_1039
0.7
P10809_1058
1.3
P10809_1080
1.8
P10809_1107
1.1
Intermediate monocyte nTPM: 1.8
Samples: 6
Max nTPM: 3.8
Min nTPM: 0.6
P10809_1004
1.5
P10809_1023
3.8
P10809_1042
1.9
P10809_1061
0.6
P10809_1081
2.1
P10809_1108
1.2
Non-classical monocyte nTPM: 2.3
Samples: 5
Max nTPM: 3.9
Min nTPM: 0.9
P10809_1005
2.0
P10809_1053
1.9
P10809_1072
3.9
P10809_1082
2.6
P10809_1109
0.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.5
Monaco sample
nTPM
Classical monocyte nTPM: 1.3
Samples: 4
Max nTPM: 3.1
Min nTPM: 0.0
RHH5313_R3680
1.4
RHH5221_R3593
0.7
RHH5250_R3622
0.0
RHH5279_R3651
3.1
Intermediate monocyte nTPM: 5.6
Samples: 4
Max nTPM: 11.7
Min nTPM: 1.2
RHH5314_R3681
7.4
RHH5222_R3594
11.7
RHH5251_R3623
1.9
RHH5280_R3652
1.2
Non-classical monocyte nTPM: 2.4
Samples: 4
Max nTPM: 5.0
Min nTPM: 0.8
RHH5315_R3682
5.0
RHH5223_R3595
2.4
RHH5252_R3624
0.8
RHH5281_R3653
1.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.1
Schmiedel sample id
TPM
Classical monocyte TPM: 18.1
Samples: 91
Max TPM: 25.5
Min TPM: 11.7
MONOCYTES_1
25.5
MONOCYTES_2
24.3
MONOCYTES_3
23.7
MONOCYTES_4
23.3
MONOCYTES_5
22.9
MONOCYTES_6
22.1
MONOCYTES_7
22.1
MONOCYTES_8
21.5
MONOCYTES_9
21.4
MONOCYTES_10
21.4
MONOCYTES_11
21.3
MONOCYTES_12
21.0
MONOCYTES_13
20.9
MONOCYTES_14
20.8
MONOCYTES_15
20.8
MONOCYTES_16
20.4
MONOCYTES_17
20.3
MONOCYTES_18
20.1
MONOCYTES_19
20.1
MONOCYTES_20
20.1
MONOCYTES_21
20.0
MONOCYTES_22
20.0
MONOCYTES_23
20.0
MONOCYTES_24
19.8
MONOCYTES_25
19.5
MONOCYTES_26
19.5
MONOCYTES_27
19.4
MONOCYTES_28
19.4
MONOCYTES_29
19.0
MONOCYTES_30
19.0
MONOCYTES_31
18.9
MONOCYTES_32
18.9
MONOCYTES_33
18.7
MONOCYTES_34
18.6
MONOCYTES_35
18.4
MONOCYTES_36
18.4
MONOCYTES_37
18.4
MONOCYTES_38
18.2
MONOCYTES_39
18.2
MONOCYTES_40
18.2
MONOCYTES_41
18.1
MONOCYTES_42
17.9
MONOCYTES_43
17.9
MONOCYTES_44
17.7
MONOCYTES_45
17.6
MONOCYTES_46
17.5
MONOCYTES_47
17.5
MONOCYTES_48
17.4
MONOCYTES_49
17.4
MONOCYTES_50
17.4
MONOCYTES_51
17.3
MONOCYTES_52
17.3
MONOCYTES_53
17.2
MONOCYTES_54
17.1
MONOCYTES_55
17.1
MONOCYTES_56
17.0
MONOCYTES_57
17.0
MONOCYTES_58
16.9
MONOCYTES_59
16.8
MONOCYTES_60
16.8
MONOCYTES_61
16.8
MONOCYTES_62
16.7
MONOCYTES_63
16.7
MONOCYTES_64
16.7
MONOCYTES_65
16.5
MONOCYTES_66
16.4
MONOCYTES_67
16.4
MONOCYTES_68
16.3
MONOCYTES_69
16.2
MONOCYTES_70
16.1
MONOCYTES_71
16.0
MONOCYTES_72
16.0
MONOCYTES_73
15.9
MONOCYTES_74
15.9
MONOCYTES_75
15.8
MONOCYTES_76
15.8
MONOCYTES_77
15.8
MONOCYTES_78
15.6
MONOCYTES_79
15.5
MONOCYTES_80
15.5
MONOCYTES_81
15.5
MONOCYTES_82
15.4
MONOCYTES_83
15.3
MONOCYTES_84
15.1
MONOCYTES_85
15.1
MONOCYTES_86
14.6
MONOCYTES_87
14.6
MONOCYTES_88
14.6
MONOCYTES_89
14.0
MONOCYTES_90
13.3
MONOCYTES_91
11.7
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Non-classical monocyte TPM: 25.1
Samples: 90
Max TPM: 37.2
Min TPM: 18.0
M2_1
37.2
M2_2
36.5
M2_3
33.4
M2_4
33.4
M2_5
32.4
M2_6
32.3
M2_7
32.0
M2_8
31.6
M2_9
31.5
M2_10
31.2
M2_11
30.4
M2_12
30.4
M2_13
29.8
M2_14
29.4
M2_15
29.1
M2_16
28.9
M2_17
28.9
M2_18
28.5
M2_19
28.0
M2_20
27.8
M2_21
27.7
M2_22
27.7
M2_23
27.6
M2_24
27.6
M2_25
27.5
M2_26
27.0
M2_27
26.9
M2_28
26.7
M2_29
26.5
M2_30
26.4
M2_31
26.3
M2_32
26.2
M2_33
26.1
M2_34
26.1
M2_35
26.0
M2_36
26.0
M2_37
25.8
M2_38
25.7
M2_39
25.6
M2_40
25.1
M2_41
25.0
M2_42
25.0
M2_43
25.0
M2_44
24.8
M2_45
24.3
M2_46
24.3
M2_47
24.1
M2_48
24.1
M2_49
23.9
M2_50
23.9
M2_51
23.7
M2_52
23.7
M2_53
23.6
M2_54
23.6
M2_55
23.5
M2_56
23.4
M2_57
23.3
M2_58
23.3
M2_59
23.1
M2_60
23.1
M2_61
23.1
M2_62
22.8
M2_63
22.5
M2_64
22.5
M2_65
22.5
M2_66
22.3
M2_67
22.2
M2_68
22.1
M2_69
21.9
M2_70
21.8
M2_71
21.7
M2_72
21.7
M2_73
21.5
M2_74
21.3
M2_75
21.2
M2_76
21.2
M2_77
21.0
M2_78
20.7
M2_79
20.7
M2_80
20.6
M2_81
20.6
M2_82
20.5
M2_83
20.0
M2_84
20.0
M2_85
20.0
M2_86
19.6
M2_87
19.3
M2_88
19.0
M2_89
18.7
M2_90
18.0
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