A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.0
nTPM
Monaco:
14.6
nTPM
Schmiedel:
132.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.0
HPA sample
nTPM
NK-cell nTPM: 11.0
Samples: 6
Max nTPM: 24.2
Min nTPM: 2.9
P10809_1013
9.9
P10809_1033
11.4
P10809_1052
8.6
P10809_1071
2.9
P10809_1093
24.2
P10809_1103
9.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.6
Monaco sample
nTPM
NK-cell nTPM: 14.6
Samples: 4
Max nTPM: 21.0
Min nTPM: 6.8
RHH5316_R3683
21.0
RHH5224_R3596
20.4
RHH5253_R3625
6.8
RHH5282_R3654
10.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
132.4
Schmiedel sample id
TPM
NK-cell TPM: 132.4
Samples: 90
Max TPM: 204.3
Min TPM: 67.0
NK_1
204.3
NK_2
203.3
NK_3
191.6
NK_4
182.8
NK_5
181.3
NK_6
181.0
NK_7
176.8
NK_8
176.4
NK_9
173.1
NK_10
171.2
NK_11
169.8
NK_12
169.5
NK_13
167.8
NK_14
167.7
NK_15
166.0
NK_16
165.0
NK_17
161.0
NK_18
160.4
NK_19
159.8
NK_20
158.7
NK_21
158.3
NK_22
157.1
NK_23
156.5
NK_24
155.7
NK_25
154.8
NK_26
154.6
NK_27
148.6
NK_28
148.5
NK_29
148.3
NK_30
146.5
NK_31
145.7
NK_32
145.1
NK_33
144.6
NK_34
143.1
NK_35
141.9
NK_36
141.6
NK_37
141.3
NK_38
141.3
NK_39
140.4
NK_40
139.6
NK_41
138.6
NK_42
137.7
NK_43
137.1
NK_44
136.2
NK_45
134.3
NK_46
134.3
NK_47
132.7
NK_48
131.6
NK_49
130.4
NK_50
128.3
NK_51
128.2
NK_52
127.7
NK_53
127.2
NK_54
127.0
NK_55
125.5
NK_56
125.2
NK_57
124.9
NK_58
123.5
NK_59
122.1
NK_60
121.1
NK_61
120.1
NK_62
117.8
NK_63
116.7
NK_64
115.1
NK_65
115.1
NK_66
114.3
NK_67
109.0
NK_68
108.6
NK_69
108.2
NK_70
107.9
NK_71
106.6
NK_72
103.9
NK_73
102.8
NK_74
99.1
NK_75
98.4
NK_76
97.6
NK_77
94.7
NK_78
94.1
NK_79
92.0
NK_80
88.1
NK_81
83.9
NK_82
82.2
NK_83
79.4
NK_84
78.7
NK_85
77.8
NK_86
75.9
NK_87
75.8
NK_88
74.4
NK_89
74.0
NK_90
67.0
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