A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.9
nTPM
Monaco:
36.3
nTPM
Schmiedel:
80.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.9
HPA sample
nTPM
Memory B-cell nTPM: 1.8
Samples: 6
Max nTPM: 4.3
Min nTPM: 0.8
P10809_1017
1.3
P10809_1025
2.5
P10809_1044
4.3
P10809_1063
0.8
P10809_1092
1.0
P10809_1105
1.2
Naive B-cell nTPM: 0.9
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.1
P10809_1011
0.9
P10809_1029
0.7
P10809_1048
0.1
P10809_1067
1.3
P10809_1091
1.4
P10809_1104
0.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 30.8
Samples: 4
Max nTPM: 43.0
Min nTPM: 15.4
RHH5310_R3677
15.4
RHH5218_R3590
43.0
RHH5247_R3619
30.7
RHH5276_R3648
33.9
Naive B-cell nTPM: 36.3
Samples: 4
Max nTPM: 60.7
Min nTPM: 16.2
RHH5308_R3675
20.7
RHH5216_R3588
47.8
RHH5245_R3617
60.7
RHH5274_R3646
16.2
Non-switched memory B-cell nTPM: 33.9
Samples: 4
Max nTPM: 45.2
Min nTPM: 14.1
RHH5309_R3676
14.1
RHH5217_R3589
33.5
RHH5246_R3618
45.2
RHH5275_R3647
42.6
Plasmablast nTPM: 6.3
Samples: 4
Max nTPM: 9.8
Min nTPM: 3.3
RHH5312_R3679
7.9
RHH5220_R3592
9.8
RHH5249_R3621
3.3
RHH5278_R3650
4.3
Switched memory B-cell nTPM: 21.0
Samples: 4
Max nTPM: 28.3
Min nTPM: 12.6
RHH5311_R3678
12.6
RHH5219_R3591
28.3
RHH5248_R3620
17.5
RHH5277_R3649
25.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.8
Schmiedel sample id
TPM
Naive B-cell TPM: 80.8
Samples: 91
Max TPM: 115.6
Min TPM: 53.9
B_CELL_NAIVE_1
115.6
B_CELL_NAIVE_2
111.9
B_CELL_NAIVE_3
110.6
B_CELL_NAIVE_4
110.5
B_CELL_NAIVE_5
109.9
B_CELL_NAIVE_6
107.5
B_CELL_NAIVE_7
105.8
B_CELL_NAIVE_8
105.1
B_CELL_NAIVE_9
103.5
B_CELL_NAIVE_10
102.1
B_CELL_NAIVE_11
100.4
B_CELL_NAIVE_12
98.9
B_CELL_NAIVE_13
98.9
B_CELL_NAIVE_14
94.9
B_CELL_NAIVE_15
94.7
B_CELL_NAIVE_16
94.1
B_CELL_NAIVE_17
92.0
B_CELL_NAIVE_18
90.7
B_CELL_NAIVE_19
90.5
B_CELL_NAIVE_20
90.0
B_CELL_NAIVE_21
89.6
B_CELL_NAIVE_22
89.5
B_CELL_NAIVE_23
88.9
B_CELL_NAIVE_24
88.6
B_CELL_NAIVE_25
88.1
B_CELL_NAIVE_26
87.3
B_CELL_NAIVE_27
86.7
B_CELL_NAIVE_28
86.4
B_CELL_NAIVE_29
86.0
B_CELL_NAIVE_30
85.4
B_CELL_NAIVE_31
84.5
B_CELL_NAIVE_32
83.3
B_CELL_NAIVE_33
83.1
B_CELL_NAIVE_34
82.4
B_CELL_NAIVE_35
82.1
B_CELL_NAIVE_36
82.0
B_CELL_NAIVE_37
81.0
B_CELL_NAIVE_38
80.0
B_CELL_NAIVE_39
80.0
B_CELL_NAIVE_40
79.8
B_CELL_NAIVE_41
79.7
B_CELL_NAIVE_42
79.4
B_CELL_NAIVE_43
79.2
B_CELL_NAIVE_44
79.0
B_CELL_NAIVE_45
78.6
B_CELL_NAIVE_46
78.2
B_CELL_NAIVE_47
77.9
B_CELL_NAIVE_48
77.4
B_CELL_NAIVE_49
77.1
B_CELL_NAIVE_50
77.0
B_CELL_NAIVE_51
76.9
B_CELL_NAIVE_52
76.5
B_CELL_NAIVE_53
76.0
B_CELL_NAIVE_54
75.9
B_CELL_NAIVE_55
75.5
B_CELL_NAIVE_56
75.3
B_CELL_NAIVE_57
75.0
B_CELL_NAIVE_58
74.3
B_CELL_NAIVE_59
74.2
B_CELL_NAIVE_60
73.6
B_CELL_NAIVE_61
72.2
B_CELL_NAIVE_62
72.1
B_CELL_NAIVE_63
71.9
B_CELL_NAIVE_64
71.7
B_CELL_NAIVE_65
71.6
B_CELL_NAIVE_66
71.6
B_CELL_NAIVE_67
71.4
B_CELL_NAIVE_68
71.2
B_CELL_NAIVE_69
71.2
B_CELL_NAIVE_70
71.1
B_CELL_NAIVE_71
70.8
B_CELL_NAIVE_72
70.5
B_CELL_NAIVE_73
70.3
B_CELL_NAIVE_74
70.1
B_CELL_NAIVE_75
70.1
B_CELL_NAIVE_76
70.1
B_CELL_NAIVE_77
69.0
B_CELL_NAIVE_78
68.9
B_CELL_NAIVE_79
68.7
B_CELL_NAIVE_80
68.6
B_CELL_NAIVE_81
67.7
B_CELL_NAIVE_82
67.6
B_CELL_NAIVE_83
67.0
B_CELL_NAIVE_84
65.3
B_CELL_NAIVE_85
62.9
B_CELL_NAIVE_86
62.4
B_CELL_NAIVE_87
61.6
B_CELL_NAIVE_88
58.5
B_CELL_NAIVE_89
55.9
B_CELL_NAIVE_90
55.7
B_CELL_NAIVE_91
53.9
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