A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.7
nTPM
Monaco:
113.3
nTPM
Schmiedel:
134.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.7
HPA sample
nTPM
Classical monocyte nTPM: 0.6
Samples: 6
Max nTPM: 0.7
Min nTPM: 0.5
P10809_1003
0.6
P10809_1020
0.5
P10809_1039
0.5
P10809_1058
0.5
P10809_1080
0.6
P10809_1107
0.7
Intermediate monocyte nTPM: 1.8
Samples: 6
Max nTPM: 3.8
Min nTPM: 0.3
P10809_1004
3.3
P10809_1023
1.2
P10809_1042
1.3
P10809_1061
3.8
P10809_1081
1.1
P10809_1108
0.3
Non-classical monocyte nTPM: 4.7
Samples: 5
Max nTPM: 10.0
Min nTPM: 2.4
P10809_1005
3.6
P10809_1053
3.0
P10809_1072
10.0
P10809_1082
2.4
P10809_1109
4.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.3
Monaco sample
nTPM
Classical monocyte nTPM: 20.4
Samples: 4
Max nTPM: 37.5
Min nTPM: 8.3
RHH5313_R3680
8.3
RHH5221_R3593
37.5
RHH5250_R3622
18.5
RHH5279_R3651
17.4
Intermediate monocyte nTPM: 72.5
Samples: 4
Max nTPM: 101.0
Min nTPM: 40.4
RHH5314_R3681
40.4
RHH5222_R3594
100.3
RHH5251_R3623
101.0
RHH5280_R3652
48.4
Non-classical monocyte nTPM: 113.3
Samples: 4
Max nTPM: 183.6
Min nTPM: 63.6
RHH5315_R3682
63.6
RHH5223_R3595
183.6
RHH5252_R3624
134.3
RHH5281_R3653
71.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
134.4
Schmiedel sample id
TPM
Classical monocyte TPM: 21.2
Samples: 91
Max TPM: 42.4
Min TPM: 8.3
MONOCYTES_1
42.4
MONOCYTES_2
29.8
MONOCYTES_3
29.4
MONOCYTES_4
29.1
MONOCYTES_5
27.7
MONOCYTES_6
27.0
MONOCYTES_7
27.0
MONOCYTES_8
26.8
MONOCYTES_9
26.4
MONOCYTES_10
26.0
MONOCYTES_11
25.7
MONOCYTES_12
25.7
MONOCYTES_13
25.6
MONOCYTES_14
25.6
MONOCYTES_15
25.4
MONOCYTES_16
25.2
MONOCYTES_17
25.0
MONOCYTES_18
24.9
MONOCYTES_19
24.9
MONOCYTES_20
24.4
MONOCYTES_21
24.3
MONOCYTES_22
24.0
MONOCYTES_23
23.9
MONOCYTES_24
23.9
MONOCYTES_25
23.9
MONOCYTES_26
23.2
MONOCYTES_27
23.0
MONOCYTES_28
22.9
MONOCYTES_29
22.8
MONOCYTES_30
22.8
MONOCYTES_31
22.6
MONOCYTES_32
22.6
MONOCYTES_33
22.6
MONOCYTES_34
22.3
MONOCYTES_35
22.3
MONOCYTES_36
22.1
MONOCYTES_37
21.9
MONOCYTES_38
21.7
MONOCYTES_39
21.6
MONOCYTES_40
21.5
MONOCYTES_41
21.5
MONOCYTES_42
21.0
MONOCYTES_43
20.8
MONOCYTES_44
20.8
MONOCYTES_45
20.7
MONOCYTES_46
20.7
MONOCYTES_47
20.6
MONOCYTES_48
20.6
MONOCYTES_49
20.6
MONOCYTES_50
20.4
MONOCYTES_51
20.2
MONOCYTES_52
20.2
MONOCYTES_53
20.1
MONOCYTES_54
20.0
MONOCYTES_55
19.9
MONOCYTES_56
19.9
MONOCYTES_57
19.9
MONOCYTES_58
19.9
MONOCYTES_59
19.9
MONOCYTES_60
19.8
MONOCYTES_61
19.7
MONOCYTES_62
19.4
MONOCYTES_63
19.3
MONOCYTES_64
19.2
MONOCYTES_65
19.0
MONOCYTES_66
19.0
MONOCYTES_67
18.9
MONOCYTES_68
18.7
MONOCYTES_69
18.7
MONOCYTES_70
18.7
MONOCYTES_71
18.7
MONOCYTES_72
18.5
MONOCYTES_73
18.4
MONOCYTES_74
18.3
MONOCYTES_75
18.0
MONOCYTES_76
17.9
MONOCYTES_77
17.8
MONOCYTES_78
17.4
MONOCYTES_79
17.3
MONOCYTES_80
17.2
MONOCYTES_81
16.8
MONOCYTES_82
16.7
MONOCYTES_83
16.5
MONOCYTES_84
14.9
MONOCYTES_85
14.4
MONOCYTES_86
13.9
MONOCYTES_87
13.8
MONOCYTES_88
12.3
MONOCYTES_89
11.7
MONOCYTES_90
10.5
MONOCYTES_91
8.3
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Non-classical monocyte TPM: 134.4
Samples: 90
Max TPM: 206.5
Min TPM: 75.7
M2_1
206.5
M2_2
204.4
M2_3
195.5
M2_4
190.0
M2_5
188.7
M2_6
184.8
M2_7
181.6
M2_8
176.0
M2_9
172.7
M2_10
170.9
M2_11
170.7
M2_12
168.1
M2_13
165.4
M2_14
165.3
M2_15
165.3
M2_16
161.7
M2_17
157.2
M2_18
156.9
M2_19
155.2
M2_20
153.3
M2_21
152.2
M2_22
151.2
M2_23
151.2
M2_24
150.1
M2_25
149.6
M2_26
149.4
M2_27
149.4
M2_28
148.8
M2_29
147.7
M2_30
146.6
M2_31
146.3
M2_32
145.0
M2_33
144.0
M2_34
144.0
M2_35
142.4
M2_36
141.2
M2_37
139.3
M2_38
139.1
M2_39
137.1
M2_40
136.7
M2_41
134.9
M2_42
134.9
M2_43
134.5
M2_44
132.7
M2_45
132.4
M2_46
132.0
M2_47
131.8
M2_48
131.8
M2_49
131.5
M2_50
130.7
M2_51
128.5
M2_52
128.1
M2_53
126.0
M2_54
123.4
M2_55
123.0
M2_56
122.3
M2_57
122.3
M2_58
121.4
M2_59
119.2
M2_60
118.8
M2_61
117.9
M2_62
117.6
M2_63
115.6
M2_64
115.5
M2_65
115.2
M2_66
115.0
M2_67
114.1
M2_68
114.1
M2_69
113.9
M2_70
113.6
M2_71
113.1
M2_72
112.9
M2_73
112.7
M2_74
109.4
M2_75
108.5
M2_76
106.5
M2_77
106.3
M2_78
106.2
M2_79
105.1
M2_80
101.7
M2_81
100.6
M2_82
100.2
M2_83
94.3
M2_84
93.1
M2_85
89.6
M2_86
88.7
M2_87
87.8
M2_88
86.7
M2_89
82.6
M2_90
75.7
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