A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.6
nTPM
Monaco:
73.5
nTPM
Schmiedel:
141.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.6
HPA sample
nTPM
NK-cell nTPM: 6.6
Samples: 6
Max nTPM: 10.0
Min nTPM: 0.6
P10809_1013
6.6
P10809_1033
10.0
P10809_1052
6.0
P10809_1071
8.1
P10809_1093
0.6
P10809_1103
8.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.5
Monaco sample
nTPM
NK-cell nTPM: 73.5
Samples: 4
Max nTPM: 80.3
Min nTPM: 59.4
RHH5316_R3683
59.4
RHH5224_R3596
80.3
RHH5253_R3625
75.5
RHH5282_R3654
78.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
141.6
Schmiedel sample id
TPM
NK-cell TPM: 141.6
Samples: 90
Max TPM: 229.3
Min TPM: 68.1
NK_1
229.3
NK_2
221.1
NK_3
220.2
NK_4
218.3
NK_5
212.5
NK_6
212.3
NK_7
201.7
NK_8
200.7
NK_9
199.2
NK_10
197.6
NK_11
186.9
NK_12
184.5
NK_13
179.3
NK_14
176.9
NK_15
175.7
NK_16
174.3
NK_17
172.0
NK_18
168.2
NK_19
167.4
NK_20
164.8
NK_21
163.8
NK_22
162.8
NK_23
160.9
NK_24
159.1
NK_25
158.9
NK_26
158.8
NK_27
157.7
NK_28
157.7
NK_29
156.5
NK_30
155.4
NK_31
154.2
NK_32
150.7
NK_33
149.8
NK_34
147.0
NK_35
146.9
NK_36
146.2
NK_37
142.7
NK_38
139.5
NK_39
139.4
NK_40
138.8
NK_41
138.6
NK_42
136.8
NK_43
136.7
NK_44
135.4
NK_45
135.1
NK_46
135.0
NK_47
134.8
NK_48
134.6
NK_49
134.2
NK_50
132.4
NK_51
132.3
NK_52
131.7
NK_53
129.9
NK_54
129.5
NK_55
127.8
NK_56
126.0
NK_57
125.6
NK_58
123.4
NK_59
121.2
NK_60
120.9
NK_61
120.4
NK_62
120.4
NK_63
120.2
NK_64
119.5
NK_65
119.0
NK_66
118.5
NK_67
118.4
NK_68
115.9
NK_69
115.7
NK_70
114.9
NK_71
113.8
NK_72
112.2
NK_73
112.1
NK_74
111.2
NK_75
110.1
NK_76
109.7
NK_77
109.0
NK_78
107.5
NK_79
107.1
NK_80
107.0
NK_81
104.6
NK_82
103.6
NK_83
103.4
NK_84
99.1
NK_85
97.6
NK_86
92.6
NK_87
88.2
NK_88
88.1
NK_89
86.1
NK_90
68.1
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