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BETA
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  • CELF2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:51.2 nTPM
Monaco:220.0 nTPM
Schmiedel:208.6 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

51.2
HPA sample nTPM
Memory B-cell
nTPM: 48.2
Samples: 6

Max nTPM: 59.1
Min nTPM: 39.5
P10809_1017 48.0
P10809_1025 47.3
P10809_1044 39.5
P10809_1063 41.3
P10809_1092 59.1
P10809_1105 53.9
Naive B-cell
nTPM: 51.2
Samples: 6

Max nTPM: 67.8
Min nTPM: 38.8
P10809_1011 49.6
P10809_1029 52.6
P10809_1048 67.8
P10809_1067 38.8
P10809_1091 49.2
P10809_1104 49.2

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

220.0
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 210.6
Samples: 4

Max nTPM: 220.7
Min nTPM: 201.5
RHH5310_R3677 201.5
RHH5218_R3590 210.3
RHH5247_R3619 220.7
RHH5276_R3648 209.9
Naive B-cell
nTPM: 220.0
Samples: 4

Max nTPM: 239.2
Min nTPM: 208.7
RHH5308_R3675 208.7
RHH5216_R3588 239.2
RHH5245_R3617 214.2
RHH5274_R3646 218.1
Non-switched memory B-cell
nTPM: 198.0
Samples: 4

Max nTPM: 223.0
Min nTPM: 178.6
RHH5309_R3676 178.6
RHH5217_R3589 223.0
RHH5246_R3618 206.7
RHH5275_R3647 183.6
Plasmablast
nTPM: 154.2
Samples: 4

Max nTPM: 171.1
Min nTPM: 125.0
RHH5312_R3679 171.1
RHH5220_R3592 166.8
RHH5249_R3621 125.0
RHH5278_R3650 154.0
Switched memory B-cell
nTPM: 211.7
Samples: 4

Max nTPM: 227.5
Min nTPM: 176.9
RHH5311_R3678 221.4
RHH5219_R3591 176.9
RHH5248_R3620 220.8
RHH5277_R3649 227.5

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

208.6
Schmiedel sample id TPM
Naive B-cell
TPM: 208.6
Samples: 91

Max TPM: 283.6
Min TPM: 148.9
B_CELL_NAIVE_1 283.6
B_CELL_NAIVE_2 278.7
B_CELL_NAIVE_3 277.2
B_CELL_NAIVE_4 265.4
B_CELL_NAIVE_5 256.0
B_CELL_NAIVE_6 249.7
B_CELL_NAIVE_7 240.7
B_CELL_NAIVE_8 237.7
B_CELL_NAIVE_9 236.1
B_CELL_NAIVE_10 235.6
B_CELL_NAIVE_11 235.2
B_CELL_NAIVE_12 234.7
B_CELL_NAIVE_13 230.6
B_CELL_NAIVE_14 230.5
B_CELL_NAIVE_15 230.4
B_CELL_NAIVE_16 228.9
B_CELL_NAIVE_17 228.7
B_CELL_NAIVE_18 228.3
B_CELL_NAIVE_19 228.1
B_CELL_NAIVE_20 224.0
B_CELL_NAIVE_21 223.9
B_CELL_NAIVE_22 221.5
B_CELL_NAIVE_23 220.1
B_CELL_NAIVE_24 219.2
B_CELL_NAIVE_25 218.6
B_CELL_NAIVE_26 218.1
B_CELL_NAIVE_27 217.0
B_CELL_NAIVE_28 216.7
B_CELL_NAIVE_29 216.6
B_CELL_NAIVE_30 215.5
B_CELL_NAIVE_31 215.5
B_CELL_NAIVE_32 214.4
B_CELL_NAIVE_33 214.2
B_CELL_NAIVE_34 214.2
B_CELL_NAIVE_35 213.2
B_CELL_NAIVE_36 212.4
B_CELL_NAIVE_37 212.1
B_CELL_NAIVE_38 211.7
B_CELL_NAIVE_39 211.6
B_CELL_NAIVE_40 209.4
B_CELL_NAIVE_41 209.0
B_CELL_NAIVE_42 208.9
B_CELL_NAIVE_43 208.5
B_CELL_NAIVE_44 207.6
B_CELL_NAIVE_45 207.1
B_CELL_NAIVE_46 205.8
B_CELL_NAIVE_47 205.7
B_CELL_NAIVE_48 205.6
B_CELL_NAIVE_49 205.2
B_CELL_NAIVE_50 204.7
B_CELL_NAIVE_51 204.4
B_CELL_NAIVE_52 204.3
B_CELL_NAIVE_53 204.2
B_CELL_NAIVE_54 204.1
B_CELL_NAIVE_55 203.4
B_CELL_NAIVE_56 201.7
B_CELL_NAIVE_57 201.4
B_CELL_NAIVE_58 200.0
B_CELL_NAIVE_59 199.7
B_CELL_NAIVE_60 199.4
B_CELL_NAIVE_61 197.8
B_CELL_NAIVE_62 197.7
B_CELL_NAIVE_63 196.0
B_CELL_NAIVE_64 194.9
B_CELL_NAIVE_65 194.0
B_CELL_NAIVE_66 193.2
B_CELL_NAIVE_67 192.8
B_CELL_NAIVE_68 192.4
B_CELL_NAIVE_69 190.9
B_CELL_NAIVE_70 190.6
B_CELL_NAIVE_71 189.7
B_CELL_NAIVE_72 189.5
B_CELL_NAIVE_73 188.7
B_CELL_NAIVE_74 188.3
B_CELL_NAIVE_75 188.3
B_CELL_NAIVE_76 188.1
B_CELL_NAIVE_77 187.0
B_CELL_NAIVE_78 185.0
B_CELL_NAIVE_79 184.9
B_CELL_NAIVE_80 182.4
B_CELL_NAIVE_81 179.7
B_CELL_NAIVE_82 178.4
B_CELL_NAIVE_83 178.4
B_CELL_NAIVE_84 177.3
B_CELL_NAIVE_85 176.4
B_CELL_NAIVE_86 175.1
B_CELL_NAIVE_87 174.9
B_CELL_NAIVE_88 174.3
B_CELL_NAIVE_89 169.6
B_CELL_NAIVE_90 167.9
B_CELL_NAIVE_91 148.9
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