A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
51.2
nTPM
Monaco:
220.0
nTPM
Schmiedel:
208.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.2
HPA sample
nTPM
Memory B-cell nTPM: 48.2
Samples: 6
Max nTPM: 59.1
Min nTPM: 39.5
P10809_1017
48.0
P10809_1025
47.3
P10809_1044
39.5
P10809_1063
41.3
P10809_1092
59.1
P10809_1105
53.9
Naive B-cell nTPM: 51.2
Samples: 6
Max nTPM: 67.8
Min nTPM: 38.8
P10809_1011
49.6
P10809_1029
52.6
P10809_1048
67.8
P10809_1067
38.8
P10809_1091
49.2
P10809_1104
49.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
220.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 210.6
Samples: 4
Max nTPM: 220.7
Min nTPM: 201.5
RHH5310_R3677
201.5
RHH5218_R3590
210.3
RHH5247_R3619
220.7
RHH5276_R3648
209.9
Naive B-cell nTPM: 220.0
Samples: 4
Max nTPM: 239.2
Min nTPM: 208.7
RHH5308_R3675
208.7
RHH5216_R3588
239.2
RHH5245_R3617
214.2
RHH5274_R3646
218.1
Non-switched memory B-cell nTPM: 198.0
Samples: 4
Max nTPM: 223.0
Min nTPM: 178.6
RHH5309_R3676
178.6
RHH5217_R3589
223.0
RHH5246_R3618
206.7
RHH5275_R3647
183.6
Plasmablast nTPM: 154.2
Samples: 4
Max nTPM: 171.1
Min nTPM: 125.0
RHH5312_R3679
171.1
RHH5220_R3592
166.8
RHH5249_R3621
125.0
RHH5278_R3650
154.0
Switched memory B-cell nTPM: 211.7
Samples: 4
Max nTPM: 227.5
Min nTPM: 176.9
RHH5311_R3678
221.4
RHH5219_R3591
176.9
RHH5248_R3620
220.8
RHH5277_R3649
227.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
208.6
Schmiedel sample id
TPM
Naive B-cell TPM: 208.6
Samples: 91
Max TPM: 283.6
Min TPM: 148.9
B_CELL_NAIVE_1
283.6
B_CELL_NAIVE_2
278.7
B_CELL_NAIVE_3
277.2
B_CELL_NAIVE_4
265.4
B_CELL_NAIVE_5
256.0
B_CELL_NAIVE_6
249.7
B_CELL_NAIVE_7
240.7
B_CELL_NAIVE_8
237.7
B_CELL_NAIVE_9
236.1
B_CELL_NAIVE_10
235.6
B_CELL_NAIVE_11
235.2
B_CELL_NAIVE_12
234.7
B_CELL_NAIVE_13
230.6
B_CELL_NAIVE_14
230.5
B_CELL_NAIVE_15
230.4
B_CELL_NAIVE_16
228.9
B_CELL_NAIVE_17
228.7
B_CELL_NAIVE_18
228.3
B_CELL_NAIVE_19
228.1
B_CELL_NAIVE_20
224.0
B_CELL_NAIVE_21
223.9
B_CELL_NAIVE_22
221.5
B_CELL_NAIVE_23
220.1
B_CELL_NAIVE_24
219.2
B_CELL_NAIVE_25
218.6
B_CELL_NAIVE_26
218.1
B_CELL_NAIVE_27
217.0
B_CELL_NAIVE_28
216.7
B_CELL_NAIVE_29
216.6
B_CELL_NAIVE_30
215.5
B_CELL_NAIVE_31
215.5
B_CELL_NAIVE_32
214.4
B_CELL_NAIVE_33
214.2
B_CELL_NAIVE_34
214.2
B_CELL_NAIVE_35
213.2
B_CELL_NAIVE_36
212.4
B_CELL_NAIVE_37
212.1
B_CELL_NAIVE_38
211.7
B_CELL_NAIVE_39
211.6
B_CELL_NAIVE_40
209.4
B_CELL_NAIVE_41
209.0
B_CELL_NAIVE_42
208.9
B_CELL_NAIVE_43
208.5
B_CELL_NAIVE_44
207.6
B_CELL_NAIVE_45
207.1
B_CELL_NAIVE_46
205.8
B_CELL_NAIVE_47
205.7
B_CELL_NAIVE_48
205.6
B_CELL_NAIVE_49
205.2
B_CELL_NAIVE_50
204.7
B_CELL_NAIVE_51
204.4
B_CELL_NAIVE_52
204.3
B_CELL_NAIVE_53
204.2
B_CELL_NAIVE_54
204.1
B_CELL_NAIVE_55
203.4
B_CELL_NAIVE_56
201.7
B_CELL_NAIVE_57
201.4
B_CELL_NAIVE_58
200.0
B_CELL_NAIVE_59
199.7
B_CELL_NAIVE_60
199.4
B_CELL_NAIVE_61
197.8
B_CELL_NAIVE_62
197.7
B_CELL_NAIVE_63
196.0
B_CELL_NAIVE_64
194.9
B_CELL_NAIVE_65
194.0
B_CELL_NAIVE_66
193.2
B_CELL_NAIVE_67
192.8
B_CELL_NAIVE_68
192.4
B_CELL_NAIVE_69
190.9
B_CELL_NAIVE_70
190.6
B_CELL_NAIVE_71
189.7
B_CELL_NAIVE_72
189.5
B_CELL_NAIVE_73
188.7
B_CELL_NAIVE_74
188.3
B_CELL_NAIVE_75
188.3
B_CELL_NAIVE_76
188.1
B_CELL_NAIVE_77
187.0
B_CELL_NAIVE_78
185.0
B_CELL_NAIVE_79
184.9
B_CELL_NAIVE_80
182.4
B_CELL_NAIVE_81
179.7
B_CELL_NAIVE_82
178.4
B_CELL_NAIVE_83
178.4
B_CELL_NAIVE_84
177.3
B_CELL_NAIVE_85
176.4
B_CELL_NAIVE_86
175.1
B_CELL_NAIVE_87
174.9
B_CELL_NAIVE_88
174.3
B_CELL_NAIVE_89
169.6
B_CELL_NAIVE_90
167.9
B_CELL_NAIVE_91
148.9
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