A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
68.1
nTPM
Monaco:
333.8
nTPM
Schmiedel:
221.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.1
HPA sample
nTPM
Classical monocyte nTPM: 43.2
Samples: 6
Max nTPM: 65.2
Min nTPM: 29.4
P10809_1003
65.2
P10809_1020
50.3
P10809_1039
41.4
P10809_1058
29.4
P10809_1080
40.6
P10809_1107
32.5
Intermediate monocyte nTPM: 57.5
Samples: 6
Max nTPM: 71.7
Min nTPM: 40.3
P10809_1004
66.7
P10809_1023
55.3
P10809_1042
65.9
P10809_1061
71.7
P10809_1081
45.1
P10809_1108
40.3
Non-classical monocyte nTPM: 68.0
Samples: 5
Max nTPM: 94.6
Min nTPM: 43.0
P10809_1005
73.8
P10809_1053
73.8
P10809_1072
94.6
P10809_1082
43.0
P10809_1109
55.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
333.8
Monaco sample
nTPM
Classical monocyte nTPM: 221.3
Samples: 4
Max nTPM: 245.7
Min nTPM: 199.7
RHH5313_R3680
236.4
RHH5221_R3593
245.7
RHH5250_R3622
203.2
RHH5279_R3651
199.7
Intermediate monocyte nTPM: 264.1
Samples: 4
Max nTPM: 296.1
Min nTPM: 235.3
RHH5314_R3681
245.1
RHH5222_R3594
296.1
RHH5251_R3623
235.3
RHH5280_R3652
280.0
Non-classical monocyte nTPM: 333.8
Samples: 4
Max nTPM: 410.6
Min nTPM: 293.7
RHH5315_R3682
293.7
RHH5223_R3595
410.6
RHH5252_R3624
297.0
RHH5281_R3653
333.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
221.4
Schmiedel sample id
TPM
Classical monocyte TPM: 128.7
Samples: 91
Max TPM: 151.5
Min TPM: 94.6
MONOCYTES_1
151.5
MONOCYTES_2
150.7
MONOCYTES_3
149.0
MONOCYTES_4
149.0
MONOCYTES_5
148.0
MONOCYTES_6
146.7
MONOCYTES_7
145.2
MONOCYTES_8
145.2
MONOCYTES_9
144.8
MONOCYTES_10
144.5
MONOCYTES_11
142.9
MONOCYTES_12
141.9
MONOCYTES_13
140.9
MONOCYTES_14
140.1
MONOCYTES_15
139.6
MONOCYTES_16
139.4
MONOCYTES_17
139.3
MONOCYTES_18
139.3
MONOCYTES_19
139.0
MONOCYTES_20
138.8
MONOCYTES_21
138.3
MONOCYTES_22
138.2
MONOCYTES_23
138.1
MONOCYTES_24
137.3
MONOCYTES_25
135.8
MONOCYTES_26
135.7
MONOCYTES_27
135.6
MONOCYTES_28
135.5
MONOCYTES_29
135.2
MONOCYTES_30
134.9
MONOCYTES_31
134.7
MONOCYTES_32
134.6
MONOCYTES_33
133.8
MONOCYTES_34
132.9
MONOCYTES_35
132.9
MONOCYTES_36
132.4
MONOCYTES_37
131.6
MONOCYTES_38
131.6
MONOCYTES_39
130.7
MONOCYTES_40
130.5
MONOCYTES_41
130.3
MONOCYTES_42
129.8
MONOCYTES_43
129.5
MONOCYTES_44
129.5
MONOCYTES_45
129.4
MONOCYTES_46
129.1
MONOCYTES_47
128.9
MONOCYTES_48
127.6
MONOCYTES_49
127.1
MONOCYTES_50
126.6
MONOCYTES_51
126.2
MONOCYTES_52
125.9
MONOCYTES_53
124.9
MONOCYTES_54
124.7
MONOCYTES_55
124.5
MONOCYTES_56
124.5
MONOCYTES_57
124.4
MONOCYTES_58
124.4
MONOCYTES_59
123.8
MONOCYTES_60
123.7
MONOCYTES_61
123.4
MONOCYTES_62
122.8
MONOCYTES_63
122.3
MONOCYTES_64
122.3
MONOCYTES_65
121.6
MONOCYTES_66
121.0
MONOCYTES_67
120.3
MONOCYTES_68
119.9
MONOCYTES_69
119.8
MONOCYTES_70
119.3
MONOCYTES_71
119.2
MONOCYTES_72
119.1
MONOCYTES_73
118.2
MONOCYTES_74
118.2
MONOCYTES_75
118.2
MONOCYTES_76
118.1
MONOCYTES_77
117.6
MONOCYTES_78
116.7
MONOCYTES_79
116.5
MONOCYTES_80
116.3
MONOCYTES_81
115.8
MONOCYTES_82
115.6
MONOCYTES_83
115.1
MONOCYTES_84
114.9
MONOCYTES_85
113.8
MONOCYTES_86
113.8
MONOCYTES_87
113.1
MONOCYTES_88
111.6
MONOCYTES_89
111.2
MONOCYTES_90
101.2
MONOCYTES_91
94.6
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Non-classical monocyte TPM: 221.4
Samples: 90
Max TPM: 284.1
Min TPM: 164.7
M2_1
284.1
M2_2
281.2
M2_3
273.0
M2_4
270.9
M2_5
269.1
M2_6
262.9
M2_7
262.5
M2_8
261.4
M2_9
259.1
M2_10
251.9
M2_11
251.9
M2_12
251.9
M2_13
251.1
M2_14
249.4
M2_15
249.4
M2_16
249.2
M2_17
248.5
M2_18
247.8
M2_19
246.0
M2_20
244.2
M2_21
243.1
M2_22
243.0
M2_23
242.9
M2_24
238.4
M2_25
235.8
M2_26
233.6
M2_27
232.7
M2_28
232.7
M2_29
232.1
M2_30
231.7
M2_31
230.7
M2_32
230.5
M2_33
230.0
M2_34
229.9
M2_35
227.0
M2_36
225.0
M2_37
225.0
M2_38
223.2
M2_39
223.1
M2_40
222.9
M2_41
222.3
M2_42
222.1
M2_43
222.0
M2_44
221.7
M2_45
221.5
M2_46
221.1
M2_47
219.7
M2_48
219.6
M2_49
218.3
M2_50
216.4
M2_51
216.0
M2_52
213.9
M2_53
213.1
M2_54
212.4
M2_55
212.3
M2_56
211.9
M2_57
211.3
M2_58
210.9
M2_59
210.8
M2_60
210.5
M2_61
209.6
M2_62
206.0
M2_63
205.7
M2_64
205.0
M2_65
204.6
M2_66
204.4
M2_67
203.7
M2_68
201.4
M2_69
201.0
M2_70
200.7
M2_71
200.6
M2_72
200.4
M2_73
200.2
M2_74
198.3
M2_75
197.1
M2_76
195.8
M2_77
195.7
M2_78
195.3
M2_79
194.8
M2_80
193.9
M2_81
192.2
M2_82
192.0
M2_83
189.5
M2_84
187.9
M2_85
182.9
M2_86
172.9
M2_87
171.9
M2_88
168.1
M2_89
165.5
M2_90
164.7
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