A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
73.8
nTPM
Monaco:
278.8
nTPM
Schmiedel:
283.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.8
HPA sample
nTPM
NK-cell nTPM: 73.8
Samples: 6
Max nTPM: 86.2
Min nTPM: 63.1
P10809_1013
69.0
P10809_1033
63.1
P10809_1052
69.6
P10809_1071
71.6
P10809_1093
83.1
P10809_1103
86.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
278.8
Monaco sample
nTPM
NK-cell nTPM: 278.8
Samples: 4
Max nTPM: 290.0
Min nTPM: 266.8
RHH5316_R3683
284.8
RHH5224_R3596
290.0
RHH5253_R3625
273.5
RHH5282_R3654
266.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
283.5
Schmiedel sample id
TPM
NK-cell TPM: 283.5
Samples: 90
Max TPM: 415.4
Min TPM: 159.2
NK_1
415.4
NK_2
378.8
NK_3
357.5
NK_4
354.0
NK_5
353.6
NK_6
351.8
NK_7
349.1
NK_8
345.9
NK_9
345.7
NK_10
342.6
NK_11
340.7
NK_12
337.1
NK_13
330.9
NK_14
327.0
NK_15
326.7
NK_16
322.3
NK_17
321.2
NK_18
316.8
NK_19
315.0
NK_20
314.0
NK_21
312.6
NK_22
311.6
NK_23
309.4
NK_24
308.6
NK_25
307.7
NK_26
304.3
NK_27
304.3
NK_28
302.9
NK_29
302.8
NK_30
299.4
NK_31
298.8
NK_32
298.7
NK_33
297.5
NK_34
297.0
NK_35
296.1
NK_36
295.8
NK_37
295.6
NK_38
295.2
NK_39
292.1
NK_40
289.1
NK_41
282.8
NK_42
282.7
NK_43
282.3
NK_44
280.9
NK_45
279.7
NK_46
278.4
NK_47
275.9
NK_48
274.5
NK_49
274.1
NK_50
272.9
NK_51
272.7
NK_52
268.7
NK_53
268.5
NK_54
268.1
NK_55
268.0
NK_56
267.8
NK_57
267.6
NK_58
266.0
NK_59
263.4
NK_60
262.6
NK_61
261.9
NK_62
259.9
NK_63
259.6
NK_64
258.5
NK_65
255.2
NK_66
255.0
NK_67
253.7
NK_68
252.8
NK_69
251.0
NK_70
248.3
NK_71
248.0
NK_72
247.5
NK_73
247.5
NK_74
247.4
NK_75
244.5
NK_76
244.5
NK_77
244.2
NK_78
241.2
NK_79
240.4
NK_80
240.0
NK_81
239.4
NK_82
237.9
NK_83
233.0
NK_84
232.4
NK_85
229.5
NK_86
222.3
NK_87
218.9
NK_88
209.5
NK_89
209.3
NK_90
159.2
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