A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
9.3
nTPM
Schmiedel:
36.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
Memory B-cell nTPM: 1.3
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.6
P10809_1017
1.2
P10809_1025
1.1
P10809_1044
2.5
P10809_1063
0.7
P10809_1092
0.6
P10809_1105
1.7
Naive B-cell nTPM: 1.6
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.5
P10809_1011
2.0
P10809_1029
0.5
P10809_1048
2.0
P10809_1067
1.4
P10809_1091
1.4
P10809_1104
2.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 8.5
Samples: 4
Max nTPM: 12.5
Min nTPM: 4.9
RHH5310_R3677
6.1
RHH5218_R3590
12.5
RHH5247_R3619
4.9
RHH5276_R3648
10.3
Naive B-cell nTPM: 9.3
Samples: 4
Max nTPM: 13.5
Min nTPM: 5.1
RHH5308_R3675
11.8
RHH5216_R3588
6.9
RHH5245_R3617
13.5
RHH5274_R3646
5.1
Non-switched memory B-cell nTPM: 7.2
Samples: 4
Max nTPM: 9.4
Min nTPM: 6.1
RHH5309_R3676
6.3
RHH5217_R3589
6.1
RHH5246_R3618
9.4
RHH5275_R3647
7.1
Plasmablast nTPM: 4.3
Samples: 4
Max nTPM: 4.8
Min nTPM: 3.3
RHH5312_R3679
4.7
RHH5220_R3592
4.8
RHH5249_R3621
3.3
RHH5278_R3650
4.4
Switched memory B-cell nTPM: 5.3
Samples: 4
Max nTPM: 7.1
Min nTPM: 3.3
RHH5311_R3678
7.1
RHH5219_R3591
3.3
RHH5248_R3620
6.1
RHH5277_R3649
4.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.4
Schmiedel sample id
TPM
Naive B-cell TPM: 36.4
Samples: 91
Max TPM: 53.3
Min TPM: 15.2
B_CELL_NAIVE_1
53.3
B_CELL_NAIVE_2
53.3
B_CELL_NAIVE_3
52.0
B_CELL_NAIVE_4
48.4
B_CELL_NAIVE_5
48.2
B_CELL_NAIVE_6
47.7
B_CELL_NAIVE_7
45.9
B_CELL_NAIVE_8
45.7
B_CELL_NAIVE_9
45.3
B_CELL_NAIVE_10
45.3
B_CELL_NAIVE_11
45.2
B_CELL_NAIVE_12
44.5
B_CELL_NAIVE_13
44.3
B_CELL_NAIVE_14
43.7
B_CELL_NAIVE_15
43.3
B_CELL_NAIVE_16
43.0
B_CELL_NAIVE_17
42.9
B_CELL_NAIVE_18
42.8
B_CELL_NAIVE_19
42.7
B_CELL_NAIVE_20
42.7
B_CELL_NAIVE_21
42.6
B_CELL_NAIVE_22
42.3
B_CELL_NAIVE_23
42.0
B_CELL_NAIVE_24
41.9
B_CELL_NAIVE_25
41.9
B_CELL_NAIVE_26
41.4
B_CELL_NAIVE_27
41.3
B_CELL_NAIVE_28
41.2
B_CELL_NAIVE_29
41.1
B_CELL_NAIVE_30
40.9
B_CELL_NAIVE_31
40.9
B_CELL_NAIVE_32
40.4
B_CELL_NAIVE_33
39.3
B_CELL_NAIVE_34
39.2
B_CELL_NAIVE_35
38.9
B_CELL_NAIVE_36
38.9
B_CELL_NAIVE_37
38.8
B_CELL_NAIVE_38
38.6
B_CELL_NAIVE_39
38.2
B_CELL_NAIVE_40
38.2
B_CELL_NAIVE_41
37.9
B_CELL_NAIVE_42
37.8
B_CELL_NAIVE_43
37.5
B_CELL_NAIVE_44
37.4
B_CELL_NAIVE_45
37.4
B_CELL_NAIVE_46
37.3
B_CELL_NAIVE_47
37.3
B_CELL_NAIVE_48
37.2
B_CELL_NAIVE_49
36.9
B_CELL_NAIVE_50
36.8
B_CELL_NAIVE_51
36.4
B_CELL_NAIVE_52
36.2
B_CELL_NAIVE_53
36.0
B_CELL_NAIVE_54
35.6
B_CELL_NAIVE_55
35.6
B_CELL_NAIVE_56
35.3
B_CELL_NAIVE_57
35.2
B_CELL_NAIVE_58
35.1
B_CELL_NAIVE_59
35.0
B_CELL_NAIVE_60
34.7
B_CELL_NAIVE_61
34.7
B_CELL_NAIVE_62
34.4
B_CELL_NAIVE_63
34.4
B_CELL_NAIVE_64
34.0
B_CELL_NAIVE_65
34.0
B_CELL_NAIVE_66
33.6
B_CELL_NAIVE_67
33.2
B_CELL_NAIVE_68
32.6
B_CELL_NAIVE_69
32.5
B_CELL_NAIVE_70
32.3
B_CELL_NAIVE_71
32.2
B_CELL_NAIVE_72
32.2
B_CELL_NAIVE_73
30.2
B_CELL_NAIVE_74
30.0
B_CELL_NAIVE_75
29.3
B_CELL_NAIVE_76
27.6
B_CELL_NAIVE_77
26.7
B_CELL_NAIVE_78
26.4
B_CELL_NAIVE_79
26.1
B_CELL_NAIVE_80
24.9
B_CELL_NAIVE_81
24.9
B_CELL_NAIVE_82
24.6
B_CELL_NAIVE_83
24.5
B_CELL_NAIVE_84
24.3
B_CELL_NAIVE_85
24.2
B_CELL_NAIVE_86
22.0
B_CELL_NAIVE_87
21.1
B_CELL_NAIVE_88
20.8
B_CELL_NAIVE_89
19.1
B_CELL_NAIVE_90
16.1
B_CELL_NAIVE_91
15.2
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