A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.4
nTPM
Monaco:
12.4
nTPM
Schmiedel:
36.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.4
HPA sample
nTPM
Classical monocyte nTPM: 2.3
Samples: 6
Max nTPM: 2.8
Min nTPM: 1.7
P10809_1003
2.8
P10809_1020
1.7
P10809_1039
1.7
P10809_1058
2.4
P10809_1080
2.8
P10809_1107
2.5
Intermediate monocyte nTPM: 2.4
Samples: 6
Max nTPM: 3.5
Min nTPM: 1.1
P10809_1004
3.4
P10809_1023
1.1
P10809_1042
1.3
P10809_1061
2.8
P10809_1081
2.0
P10809_1108
3.5
Non-classical monocyte nTPM: 2.3
Samples: 5
Max nTPM: 3.1
Min nTPM: 0.2
P10809_1005
2.9
P10809_1053
3.1
P10809_1072
0.2
P10809_1082
2.4
P10809_1109
2.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.4
Monaco sample
nTPM
Classical monocyte nTPM: 10.3
Samples: 4
Max nTPM: 12.5
Min nTPM: 8.8
RHH5313_R3680
12.5
RHH5221_R3593
8.8
RHH5250_R3622
9.7
RHH5279_R3651
10.0
Intermediate monocyte nTPM: 9.0
Samples: 4
Max nTPM: 11.6
Min nTPM: 6.8
RHH5314_R3681
7.4
RHH5222_R3594
10.4
RHH5251_R3623
11.6
RHH5280_R3652
6.8
Non-classical monocyte nTPM: 12.4
Samples: 4
Max nTPM: 14.5
Min nTPM: 8.8
RHH5315_R3682
14.2
RHH5223_R3595
12.1
RHH5252_R3624
14.5
RHH5281_R3653
8.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.2
Schmiedel sample id
TPM
Classical monocyte TPM: 28.3
Samples: 91
Max TPM: 49.1
Min TPM: 18.7
MONOCYTES_1
49.1
MONOCYTES_2
43.3
MONOCYTES_3
42.8
MONOCYTES_4
40.6
MONOCYTES_5
40.0
MONOCYTES_6
38.2
MONOCYTES_7
38.1
MONOCYTES_8
37.6
MONOCYTES_9
37.3
MONOCYTES_10
36.1
MONOCYTES_11
36.0
MONOCYTES_12
35.5
MONOCYTES_13
33.5
MONOCYTES_14
33.5
MONOCYTES_15
33.3
MONOCYTES_16
32.7
MONOCYTES_17
32.7
MONOCYTES_18
32.5
MONOCYTES_19
32.3
MONOCYTES_20
32.1
MONOCYTES_21
32.1
MONOCYTES_22
31.6
MONOCYTES_23
31.3
MONOCYTES_24
31.0
MONOCYTES_25
30.9
MONOCYTES_26
30.7
MONOCYTES_27
30.5
MONOCYTES_28
30.5
MONOCYTES_29
30.2
MONOCYTES_30
30.1
MONOCYTES_31
29.9
MONOCYTES_32
29.7
MONOCYTES_33
29.7
MONOCYTES_34
29.6
MONOCYTES_35
29.6
MONOCYTES_36
29.5
MONOCYTES_37
29.3
MONOCYTES_38
29.1
MONOCYTES_39
29.0
MONOCYTES_40
29.0
MONOCYTES_41
28.7
MONOCYTES_42
28.7
MONOCYTES_43
28.6
MONOCYTES_44
28.5
MONOCYTES_45
28.3
MONOCYTES_46
28.2
MONOCYTES_47
27.8
MONOCYTES_48
27.6
MONOCYTES_49
27.3
MONOCYTES_50
27.3
MONOCYTES_51
27.2
MONOCYTES_52
27.1
MONOCYTES_53
27.0
MONOCYTES_54
26.8
MONOCYTES_55
26.5
MONOCYTES_56
26.4
MONOCYTES_57
26.4
MONOCYTES_58
26.3
MONOCYTES_59
26.2
MONOCYTES_60
26.1
MONOCYTES_61
25.7
MONOCYTES_62
25.7
MONOCYTES_63
25.6
MONOCYTES_64
25.5
MONOCYTES_65
25.3
MONOCYTES_66
25.2
MONOCYTES_67
25.0
MONOCYTES_68
24.5
MONOCYTES_69
24.5
MONOCYTES_70
24.5
MONOCYTES_71
24.5
MONOCYTES_72
24.1
MONOCYTES_73
23.1
MONOCYTES_74
22.1
MONOCYTES_75
21.8
MONOCYTES_76
21.7
MONOCYTES_77
21.6
MONOCYTES_78
21.2
MONOCYTES_79
21.0
MONOCYTES_80
20.9
MONOCYTES_81
20.7
MONOCYTES_82
20.6
MONOCYTES_83
20.6
MONOCYTES_84
20.5
MONOCYTES_85
20.2
MONOCYTES_86
20.1
MONOCYTES_87
19.8
MONOCYTES_88
19.3
MONOCYTES_89
19.1
MONOCYTES_90
19.0
MONOCYTES_91
18.7
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Non-classical monocyte TPM: 36.2
Samples: 90
Max TPM: 52.6
Min TPM: 17.9
M2_1
52.6
M2_2
50.6
M2_3
49.3
M2_4
48.7
M2_5
48.5
M2_6
48.0
M2_7
47.3
M2_8
47.3
M2_9
44.9
M2_10
43.9
M2_11
43.6
M2_12
43.2
M2_13
43.1
M2_14
42.4
M2_15
42.3
M2_16
42.2
M2_17
42.1
M2_18
41.9
M2_19
41.5
M2_20
41.4
M2_21
41.4
M2_22
41.2
M2_23
41.0
M2_24
40.5
M2_25
40.3
M2_26
40.2
M2_27
40.2
M2_28
40.1
M2_29
39.9
M2_30
39.9
M2_31
39.8
M2_32
39.7
M2_33
39.4
M2_34
39.1
M2_35
39.0
M2_36
38.9
M2_37
38.5
M2_38
38.4
M2_39
38.0
M2_40
38.0
M2_41
37.9
M2_42
37.7
M2_43
37.5
M2_44
36.6
M2_45
36.3
M2_46
36.3
M2_47
36.1
M2_48
35.9
M2_49
35.8
M2_50
35.5
M2_51
34.9
M2_52
34.8
M2_53
34.7
M2_54
34.7
M2_55
34.6
M2_56
34.4
M2_57
34.2
M2_58
34.2
M2_59
34.1
M2_60
33.6
M2_61
33.4
M2_62
32.9
M2_63
32.8
M2_64
32.7
M2_65
32.6
M2_66
32.0
M2_67
32.0
M2_68
31.9
M2_69
31.8
M2_70
31.4
M2_71
31.0
M2_72
30.6
M2_73
30.1
M2_74
29.6
M2_75
29.6
M2_76
29.4
M2_77
28.5
M2_78
28.1
M2_79
27.7
M2_80
27.3
M2_81
27.0
M2_82
26.0
M2_83
25.9
M2_84
25.1
M2_85
24.8
M2_86
24.3
M2_87
24.3
M2_88
22.7
M2_89
19.2
M2_90
17.9
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