A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
8.6
nTPM
Schmiedel:
44.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
NK-cell nTPM: 1.2
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.0
P10809_1013
1.2
P10809_1033
0.0
P10809_1052
1.8
P10809_1071
0.8
P10809_1093
1.8
P10809_1103
1.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.6
Monaco sample
nTPM
NK-cell nTPM: 8.6
Samples: 4
Max nTPM: 9.4
Min nTPM: 7.6
RHH5316_R3683
9.4
RHH5224_R3596
7.6
RHH5253_R3625
8.7
RHH5282_R3654
8.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.2
Schmiedel sample id
TPM
NK-cell TPM: 44.2
Samples: 90
Max TPM: 75.1
Min TPM: 22.4
NK_1
75.1
NK_2
71.0
NK_3
68.5
NK_4
67.7
NK_5
66.6
NK_6
65.2
NK_7
62.9
NK_8
62.6
NK_9
59.1
NK_10
59.1
NK_11
59.0
NK_12
57.4
NK_13
56.6
NK_14
56.4
NK_15
56.3
NK_16
55.0
NK_17
54.6
NK_18
54.0
NK_19
53.6
NK_20
53.2
NK_21
52.4
NK_22
51.9
NK_23
51.8
NK_24
51.4
NK_25
51.1
NK_26
51.1
NK_27
50.2
NK_28
49.7
NK_29
49.6
NK_30
49.5
NK_31
48.7
NK_32
48.6
NK_33
47.9
NK_34
47.8
NK_35
47.8
NK_36
47.7
NK_37
47.7
NK_38
46.9
NK_39
46.5
NK_40
46.2
NK_41
45.6
NK_42
44.7
NK_43
44.4
NK_44
44.2
NK_45
43.8
NK_46
43.5
NK_47
42.5
NK_48
42.1
NK_49
42.0
NK_50
41.8
NK_51
41.7
NK_52
41.5
NK_53
41.3
NK_54
40.6
NK_55
40.1
NK_56
39.4
NK_57
37.9
NK_58
37.8
NK_59
37.3
NK_60
37.3
NK_61
36.4
NK_62
36.1
NK_63
36.1
NK_64
35.8
NK_65
35.6
NK_66
35.2
NK_67
35.1
NK_68
34.5
NK_69
34.3
NK_70
34.0
NK_71
33.9
NK_72
33.8
NK_73
33.7
NK_74
32.8
NK_75
31.9
NK_76
31.8
NK_77
31.5
NK_78
30.8
NK_79
30.6
NK_80
30.6
NK_81
30.5
NK_82
30.0
NK_83
29.5
NK_84
29.5
NK_85
29.1
NK_86
27.9
NK_87
26.5
NK_88
24.7
NK_89
23.8
NK_90
22.4
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