MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.9 nTPM
HPA Brain:52.1 nTPM
GTEx:16.9 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:21.2 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.0
2219 Male, age 76, both hemispheres 54.6
2586 Male, age 75, left hemisphere 53.4
2666 Male, age 74, left hemisphere 42.2
2828 Female, age 72, unknown 39.9
1827 Male, age 72, unknown 39.7
1833 Male, age 53, unknown 38.3
1830 Male, age 51, unknown 32.7
2411 Female, age 72, unknown 30.3
2019 Male, age 18, unknown 30.1
1870 Female, age 42, unknown 28.9
Dorsal raphe nucleus
nTPM: 37.1
2047 Male, age 72, unknown 45.3
2298 Female, age 72, unknown 39.0
2016 Female, age 72, unknown 38.1
1828 Male, age 53, unknown 35.2
2750 Male, age 76, both hemispheres 28.2
Inferior colliculus
nTPM: 34.0
2849 Male, age 72, unknown 37.4
1848 Female, age 42, unknown 34.9
2097 Female, age 72, unknown 33.8
1890 Male, age 53, unknown 30.0
Median raphe nucleus
nTPM: 39.2
2220 Male, age 76, midline 39.2
Periaquaductal grey, anterior
nTPM: 37.9
1795 Male, age 51, unknown 41.9
2502 Female, age 75, unknown 40.9
1947 Male, age 18, unknown 30.8
Periaquaductal grey, dorsal
nTPM: 34.0
1840 Male, age 53, unknown 41.2
1831 Male, age 72, unknown 33.9
2464 Female, age 72, unknown 33.7
2850 Male, age 76, both hemispheres 27.2
Periaquaductal grey, lateral
nTPM: 29.8
2053 Male, age 18, unknown 32.7
2140 Male, age 76, both hemispheres 29.2
2272 Male, age 74, both hemispheres 27.6
Pretectal area
nTPM: 36.9
2007 Male, age 72, unknown 46.0
1944 Female, age 72, unknown 43.2
2407 Male, age 75, both hemispheres 40.7
1817 Female, age 42, unknown 40.3
1815 Male, age 53, unknown 40.2
2667 Female, age 75, unknown 37.4
2825 Male, age 18, unknown 34.0
1816 Male, age 51, unknown 33.7
2224 Female, age 72, unknown 31.7
2316 Male, age 76, right hemisphere 29.9
2273 Male, age 74, both hemispheres 28.9
Red nucleus
nTPM: 25.6
2584 Male, age 75, left hemisphere 41.1
2588 Male, age 74, left hemisphere 32.6
2785 Male, age 18, unknown 31.2
2725 Female, age 75, unknown 29.2
1954 Female, age 42, unknown 28.1
1904 Male, age 53, unknown 26.0
2503 Female, age 72, unknown 24.2
1865 Male, age 51, unknown 22.2
2227 Male, age 72, unknown 21.4
2769 Male, age 72, unknown 20.8
1821 Female, age 72, unknown 17.9
2823 Male, age 76, right hemisphere 12.9
Substantia nigra
nTPM: 52.1
1916 Female, age 42, unknown 69.8
1851 Male, age 51, unknown 61.9
2241 Male, age 72, unknown 60.9
2583 Male, age 75, right hemisphere 59.8
2409 Female, age 72, unknown 53.4
2699 Male, age 18, unknown 51.5
2665 Male, age 74, both hemispheres 48.9
1889 Female, age 72, unknown 45.1
1941 Male, age 53, unknown 38.0
2590 Female, age 75, unknown 31.5
Superior colliculus
nTPM: 34.0
2664 Male, age 75, both hemispheres 49.5
1796 Male, age 53, unknown 45.4
2668 Female, age 75, unknown 40.2
2261 Male, age 18, unknown 38.7
2087 Female, age 72, unknown 33.2
1839 Male, age 51, unknown 31.5
2587 Male, age 74, left hemisphere 30.2
1895 Male, age 76, right hemisphere 28.3
1913 Female, age 42, unknown 22.9
1995 Male, age 72, unknown 20.5
Ventral tegmental area
nTPM: 42.3
1915 Female, age 42, unknown 52.4
1942 Male, age 51, unknown 44.8
2410 Female, age 72, unknown 43.7
2218 Male, age 76, both hemispheres 43.0
2223 Female, age 72, unknown 36.1
2021 Male, age 53, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.9
Samples: 183

Max nTPM: 63.8
Min nTPM: 4.2
Std nTPM: 8.2
Median nTPM: 15.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 63.8
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 58.2
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 55.7
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 41.8
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 36.6
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 35.8
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 31.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 31.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 31.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 31.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 30.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.1
FF:10158-103A5 76 years, female 19.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.3
Samples: 4

Max nTPM: 29.8
Min nTPM: 20.4
Sample A Female 27.0
Sample B Female 20.4
Sample C Male 29.8
Sample D Male 24.1
Midbrain
nTPM: 27.8
Samples: 4

Max nTPM: 30.6
Min nTPM: 25.7
Sample A Female 30.6
Sample B Female 26.9
Sample C Male 28.0
Sample D Male 25.7
Periaqueductal gray
nTPM: 20.1
Samples: 3

Max nTPM: 22.8
Min nTPM: 17.5
Sample B Female 22.8
Sample C Male 20.0
Sample D Male 17.5
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 23.8
Min nTPM: 15.0
Sample A Female 23.8
Sample B Female 15.0
Sample C Male 20.9
Sample D Male 23.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 24.1
Min nTPM: 17.3
Sample A Male 17.3
Sample B Male 22.4
Sample C Female 24.1
Sample D Female 21.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
74047904 Antisense, RP_051214_02_C01, Mouse strain C57BL/6J (56 days, male) 2.3
386000 Antisense, RP_040625_01_G10, Mouse strain C57BL/6J (56 days, male) 1.1

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