On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
11.1
nTPM
HPA Brain:
378.5
nTPM
GTEx:
11.1
nTPM
FANTOM5:
247.3
Scaled Tags Per Million
Macaque:
209.2
nTPM
Mouse:
29.1
nTPM
Rat:
17.8
nTPM
Pig:
213.0
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
378.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 282.7
2586
Male, age 75, left hemisphere
443.0
2019
Male, age 18, unknown
334.1
2828
Female, age 72, unknown
297.6
2411
Female, age 72, unknown
293.4
2666
Male, age 74, left hemisphere
280.5
1827
Male, age 72, unknown
265.8
1870
Female, age 42, unknown
255.9
1833
Male, age 53, unknown
225.1
2219
Male, age 76, both hemispheres
225.0
1830
Male, age 51, unknown
206.8
Dorsal raphe nucleus nTPM: 309.7
2298
Female, age 72, unknown
419.1
2047
Male, age 72, unknown
321.9
1828
Male, age 53, unknown
286.3
2750
Male, age 76, both hemispheres
266.2
2016
Female, age 72, unknown
255.1
Inferior colliculus nTPM: 277.6
2097
Female, age 72, unknown
318.9
1890
Male, age 53, unknown
274.6
2849
Male, age 72, unknown
262.9
1848
Female, age 42, unknown
254.2
Median raphe nucleus nTPM: 361.3
2220
Male, age 76, midline
361.3
Periaquaductal grey, anterior nTPM: 307.2
1795
Male, age 51, unknown
352.5
1947
Male, age 18, unknown
288.8
2502
Female, age 75, unknown
280.3
Periaquaductal grey, dorsal nTPM: 278.6
1840
Male, age 53, unknown
327.3
2850
Male, age 76, both hemispheres
276.8
1831
Male, age 72, unknown
274.4
2464
Female, age 72, unknown
236.0
Periaquaductal grey, lateral nTPM: 263.1
2272
Male, age 74, both hemispheres
273.0
2140
Male, age 76, both hemispheres
261.8
2053
Male, age 18, unknown
254.4
Pretectal area nTPM: 378.5
2007
Male, age 72, unknown
529.5
1816
Male, age 51, unknown
524.1
1817
Female, age 42, unknown
473.1
1944
Female, age 72, unknown
464.2
1815
Male, age 53, unknown
426.0
2224
Female, age 72, unknown
330.2
2273
Male, age 74, both hemispheres
323.0
2667
Female, age 75, unknown
318.4
2407
Male, age 75, both hemispheres
281.9
2825
Male, age 18, unknown
259.0
2316
Male, age 76, right hemisphere
233.7
Red nucleus nTPM: 232.2
2785
Male, age 18, unknown
344.6
2584
Male, age 75, left hemisphere
311.9
2725
Female, age 75, unknown
277.8
1821
Female, age 72, unknown
251.5
1904
Male, age 53, unknown
224.1
2503
Female, age 72, unknown
207.1
1954
Female, age 42, unknown
202.8
2769
Male, age 72, unknown
202.0
2227
Male, age 72, unknown
199.1
2823
Male, age 76, right hemisphere
194.2
1865
Male, age 51, unknown
186.9
2588
Male, age 74, left hemisphere
183.9
Substantia nigra nTPM: 375.0
1916
Female, age 42, unknown
447.8
2583
Male, age 75, right hemisphere
420.5
1889
Female, age 72, unknown
404.0
1851
Male, age 51, unknown
402.6
2590
Female, age 75, unknown
375.2
2241
Male, age 72, unknown
365.5
1941
Male, age 53, unknown
365.2
2665
Male, age 74, both hemispheres
353.8
2409
Female, age 72, unknown
347.9
2699
Male, age 18, unknown
267.8
Superior colliculus nTPM: 292.2
2087
Female, age 72, unknown
397.8
2664
Male, age 75, both hemispheres
352.6
2261
Male, age 18, unknown
334.6
1796
Male, age 53, unknown
317.0
2668
Female, age 75, unknown
290.7
1995
Male, age 72, unknown
269.4
1839
Male, age 51, unknown
255.3
1913
Female, age 42, unknown
253.2
2587
Male, age 74, left hemisphere
240.1
1895
Male, age 76, right hemisphere
211.4
Ventral tegmental area nTPM: 336.0
1915
Female, age 42, unknown
360.2
2410
Female, age 72, unknown
356.9
1942
Male, age 51, unknown
340.9
2218
Male, age 76, both hemispheres
331.0
2223
Female, age 72, unknown
328.7
2021
Male, age 53, unknown
298.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 11.1
Samples: 183
Max nTPM: 47.4
Min nTPM: 0.6
Std nTPM: 9.2
Median nTPM: 8.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
47.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
43.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
40.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
38.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
36.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
35.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
35.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
33.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
31.0
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
29.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
28.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
28.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
27.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
27.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
26.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
25.8
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
25.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
25.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
24.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
23.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
23.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
22.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
22.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
22.0
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
21.5
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
21.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
21.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
21.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
20.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
20.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
20.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
18.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
18.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
17.8
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
17.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
16.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
16.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
16.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
16.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
16.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
15.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
15.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
15.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
15.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
15.5
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
15.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
15.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
14.9
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
14.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
14.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
13.9
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
13.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
13.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
13.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
13.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
12.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
12.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
12.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
12.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
12.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
12.1
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
12.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
11.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
11.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
11.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
11.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
11.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
10.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
10.8
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
10.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
10.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
10.5
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
10.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
10.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
10.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
10.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
10.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
10.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
9.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
9.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
9.7
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
9.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
9.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
9.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
9.2
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
9.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
8.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
8.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
8.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
8.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
8.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
8.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8.2
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
8.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
8.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
8.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
8.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
8.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
7.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
7.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
7.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
7.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
7.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
7.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
7.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
7.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
7.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
6.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
6.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
6.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
6.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
6.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
6.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
5.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
5.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
5.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
5.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
5.6
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
5.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
5.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
5.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
5.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
5.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
5.4
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
5.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
5.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
4.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
4.9
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
4.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
4.8
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
4.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
4.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
4.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
4.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
4.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
4.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
4.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
4.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
4.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
4.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
3.9
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
3.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
3.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
3.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
3.7
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
3.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
3.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
3.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
3.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
3.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
3.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
3.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
3.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
3.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
3.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
3.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
3.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
2.9
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
2.9
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
2.7
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
2.4
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
2.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
2.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
2.0
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
2.0
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
2.0
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1.9
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
1.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1.6
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1.6
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1.5
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
0.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
0.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
209.2
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 152.8
Samples: 1
Max nTPM: 152.8
Min nTPM: 152.8
Sample A
152.8
Midbrain nTPM: 190.3
Samples: 1
Max nTPM: 190.3
Min nTPM: 190.3
Sample A
190.3
Superior colliculi nTPM: 209.2
Samples: 1
Max nTPM: 209.2
Min nTPM: 209.2
Sample A
209.2
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
213.0
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 179.9
Samples: 3
Max nTPM: 218.2
Min nTPM: 107.2
Sample A
Female
218.2
Sample B
Female
107.2
Sample C
Male
214.4
Midbrain nTPM: 213.0
Samples: 3
Max nTPM: 332.6
Min nTPM: 117.4
Sample B
Female
117.4
Sample C
Male
332.6
Sample D
Male
189.1
Periaqueductal gray nTPM: 127.8
Samples: 3
Max nTPM: 170.2
Min nTPM: 104.0
Sample B
Female
109.1
Sample C
Male
170.2
Sample D
Male
104.0
Superior colliculi nTPM: 205.7
Samples: 4
Max nTPM: 336.8
Min nTPM: 121.5
Sample A
Female
177.4
Sample B
Female
121.5
Sample C
Male
336.8
Sample D
Male
186.9
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 29.1
Samples: 4
Max nTPM: 31.0
Min nTPM: 28.1
Sample A
28.1
Sample B
31.0
Sample C
28.8
Sample D
28.4
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.8
Rat sample
Sample description
nTPM
Midbrain nTPM: 17.8
Samples: 4
Max nTPM: 18.8
Min nTPM: 16.9
Sample A
18.8
Sample A
17.4
Sample A
18.1
Sample A
16.9
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The Human Protein Atlas project is funded
