MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.1 nTPM
HPA Brain:377.1 nTPM
GTEx:11.1 nTPM
FANTOM5:247.3 Scaled Tags Per Million
Pig:204.6 nTPM
Mouse:35.5 nTPM
Allen mouse:4.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 377.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 281.7
2586 Male, age 75, left hemisphere 440.8
2019 Male, age 18, unknown 332.9
2828 Female, age 72, unknown 296.5
2411 Female, age 72, unknown 292.4
2666 Male, age 74, left hemisphere 279.6
1827 Male, age 72, unknown 264.9
1870 Female, age 42, unknown 255.0
2219 Male, age 76, both hemispheres 224.4
1833 Male, age 53, unknown 224.3
1830 Male, age 51, unknown 206.1
Dorsal raphe nucleus
nTPM: 308.6
2298 Female, age 72, unknown 417.4
2047 Male, age 72, unknown 320.8
1828 Male, age 53, unknown 285.2
2750 Male, age 76, both hemispheres 265.5
2016 Female, age 72, unknown 254.1
Inferior colliculus
nTPM: 276.6
2097 Female, age 72, unknown 317.6
1890 Male, age 53, unknown 273.6
2849 Male, age 72, unknown 261.9
1848 Female, age 42, unknown 253.3
Median raphe nucleus
nTPM: 360.4
2220 Male, age 76, midline 360.4
Periaquaductal grey, anterior
nTPM: 306.1
1795 Male, age 51, unknown 351.1
1947 Male, age 18, unknown 287.9
2502 Female, age 75, unknown 279.2
Periaquaductal grey, dorsal
nTPM: 277.6
1840 Male, age 53, unknown 326.1
2850 Male, age 76, both hemispheres 276.0
1831 Male, age 72, unknown 273.3
2464 Female, age 72, unknown 235.1
Periaquaductal grey, lateral
nTPM: 262.2
2272 Male, age 74, both hemispheres 272.1
2140 Male, age 76, both hemispheres 261.0
2053 Male, age 18, unknown 253.5
Pretectal area
nTPM: 377.1
2007 Male, age 72, unknown 527.4
1816 Male, age 51, unknown 522.5
1817 Female, age 42, unknown 471.4
1944 Female, age 72, unknown 462.7
1815 Male, age 53, unknown 424.7
2224 Female, age 72, unknown 328.8
2273 Male, age 74, both hemispheres 321.8
2667 Female, age 75, unknown 317.3
2407 Male, age 75, both hemispheres 280.4
2825 Male, age 18, unknown 258.1
2316 Male, age 76, right hemisphere 233.0
Red nucleus
nTPM: 231.3
2785 Male, age 18, unknown 343.3
2584 Male, age 75, left hemisphere 310.3
2725 Female, age 75, unknown 276.7
1821 Female, age 72, unknown 250.7
1904 Male, age 53, unknown 223.2
2503 Female, age 72, unknown 206.4
1954 Female, age 42, unknown 202.0
2769 Male, age 72, unknown 201.2
2227 Male, age 72, unknown 198.4
2823 Male, age 76, right hemisphere 193.7
1865 Male, age 51, unknown 186.2
2588 Male, age 74, left hemisphere 183.4
Substantia nigra
nTPM: 373.6
1916 Female, age 42, unknown 445.9
2583 Male, age 75, right hemisphere 418.5
1889 Female, age 72, unknown 402.5
1851 Male, age 51, unknown 401.1
2590 Female, age 75, unknown 373.9
2241 Male, age 72, unknown 364.4
1941 Male, age 53, unknown 364.0
2665 Male, age 74, both hemispheres 352.5
2409 Female, age 72, unknown 346.7
2699 Male, age 18, unknown 266.8
Superior colliculus
nTPM: 291.1
2087 Female, age 72, unknown 396.5
2664 Male, age 75, both hemispheres 350.6
2261 Male, age 18, unknown 333.4
1796 Male, age 53, unknown 315.8
2668 Female, age 75, unknown 289.6
1995 Male, age 72, unknown 268.4
1839 Male, age 51, unknown 254.3
1913 Female, age 42, unknown 252.2
2587 Male, age 74, left hemisphere 239.3
1895 Male, age 76, right hemisphere 210.9
Ventral tegmental area
nTPM: 334.9
1915 Female, age 42, unknown 358.9
2410 Female, age 72, unknown 355.5
1942 Male, age 51, unknown 339.6
2218 Male, age 76, both hemispheres 330.2
2223 Female, age 72, unknown 327.6
2021 Male, age 53, unknown 297.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.1
Samples: 183

Max nTPM: 47.4
Min nTPM: 0.6
Std nTPM: 9.2
Median nTPM: 8.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 47.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 43.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 40.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 36.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 35.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 35.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 33.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 31.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 29.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 28.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 247.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 247.3
FF:10158-103A5 76 years, female 247.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 204.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 148.7
Samples: 4

Max nTPM: 216.8
Min nTPM: 57.5
Sample A Female 216.8
Sample B Female 106.9
Sample C Male 213.4
Sample D Male 57.5
Midbrain
nTPM: 188.7
Samples: 4

Max nTPM: 331.6
Min nTPM: 116.9
Sample A Female 117.6
Sample B Female 116.9
Sample C Male 331.6
Sample D Male 188.8
Periaqueductal gray
nTPM: 127.5
Samples: 3

Max nTPM: 169.9
Min nTPM: 103.8
Sample B Female 108.8
Sample C Male 169.9
Sample D Male 103.8
Superior colliculi
nTPM: 204.6
Samples: 4

Max nTPM: 335.2
Min nTPM: 120.9
Sample A Female 176.2
Sample B Female 120.9
Sample C Male 335.2
Sample D Male 186.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.5
Samples: 4

Max nTPM: 36.8
Min nTPM: 34.1
Sample A Male 34.1
Sample B Male 36.8
Sample C Female 35.6
Sample D Female 35.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
75457696 Antisense, RP_060523_03_H09, Mouse strain C57BL/6J (56 days, male) 5.8
75457695 Antisense, RP_060523_03_G09, Mouse strain C57BL/6J (56 days, male) 5.6
75492875 Antisense, RP_060523_03_E09, Mouse strain C57BL/6J (56 days, male) 5.6
75457693 Antisense, RP_060523_03_E09, Mouse strain C57BL/6J (56 days, male) 5.3
75496228 Antisense, RP_060523_03_G09, Mouse strain C57BL/6J (56 days, male) 5.3
75492877 Antisense, RP_060523_03_G09, Mouse strain C57BL/6J (56 days, male) 5.1
75457694 Antisense, RP_060523_03_F09, Mouse strain C57BL/6J (56 days, male) 5.0
75496225 Antisense, RP_060523_03_E09, Mouse strain C57BL/6J (56 days, male) 4.6
75496227 Antisense, RP_060523_03_F09, Mouse strain C57BL/6J (56 days, male) 4.3

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