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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • CYBA
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:115.4 nTPM
Monaco:274.8 nTPM
Schmiedel:209.3 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

115.4
HPA sample nTPM
Memory B-cell
nTPM: 115.4
Samples: 6

Max nTPM: 341.4
Min nTPM: 42.0
P10809_1017 100.4
P10809_1025 65.5
P10809_1044 341.4
P10809_1063 42.0
P10809_1092 59.2
P10809_1105 84.0
Naive B-cell
nTPM: 115.3
Samples: 6

Max nTPM: 263.2
Min nTPM: 49.3
P10809_1011 114.9
P10809_1029 88.6
P10809_1048 263.2
P10809_1067 49.3
P10809_1091 80.7
P10809_1104 94.8

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

274.8
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 216.0
Samples: 4

Max nTPM: 341.5
Min nTPM: 158.1
RHH5310_R3677 183.3
RHH5218_R3590 158.1
RHH5247_R3619 181.0
RHH5276_R3648 341.5
Naive B-cell
nTPM: 218.4
Samples: 4

Max nTPM: 252.8
Min nTPM: 173.9
RHH5308_R3675 252.8
RHH5216_R3588 173.9
RHH5245_R3617 219.2
RHH5274_R3646 227.5
Non-switched memory B-cell
nTPM: 174.5
Samples: 4

Max nTPM: 220.1
Min nTPM: 98.9
RHH5309_R3676 213.1
RHH5217_R3589 165.9
RHH5246_R3618 98.9
RHH5275_R3647 220.1
Plasmablast
nTPM: 274.8
Samples: 4

Max nTPM: 316.7
Min nTPM: 238.8
RHH5312_R3679 238.8
RHH5220_R3592 254.8
RHH5249_R3621 289.0
RHH5278_R3650 316.7
Switched memory B-cell
nTPM: 214.7
Samples: 4

Max nTPM: 265.2
Min nTPM: 121.5
RHH5311_R3678 265.2
RHH5219_R3591 209.0
RHH5248_R3620 121.5
RHH5277_R3649 263.1

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

209.3
Schmiedel sample id TPM
Naive B-cell
TPM: 209.3
Samples: 91

Max TPM: 411.4
Min TPM: 36.2
B_CELL_NAIVE_1 411.4
B_CELL_NAIVE_2 380.5
B_CELL_NAIVE_3 373.2
B_CELL_NAIVE_4 349.8
B_CELL_NAIVE_5 342.7
B_CELL_NAIVE_6 338.2
B_CELL_NAIVE_7 334.3
B_CELL_NAIVE_8 333.4
B_CELL_NAIVE_9 333.3
B_CELL_NAIVE_10 327.3
B_CELL_NAIVE_11 316.9
B_CELL_NAIVE_12 316.3
B_CELL_NAIVE_13 312.6
B_CELL_NAIVE_14 310.4
B_CELL_NAIVE_15 293.4
B_CELL_NAIVE_16 290.7
B_CELL_NAIVE_17 289.6
B_CELL_NAIVE_18 286.6
B_CELL_NAIVE_19 284.6
B_CELL_NAIVE_20 283.5
B_CELL_NAIVE_21 280.2
B_CELL_NAIVE_22 276.8
B_CELL_NAIVE_23 275.5
B_CELL_NAIVE_24 274.0
B_CELL_NAIVE_25 267.6
B_CELL_NAIVE_26 267.3
B_CELL_NAIVE_27 265.3
B_CELL_NAIVE_28 264.4
B_CELL_NAIVE_29 261.6
B_CELL_NAIVE_30 259.6
B_CELL_NAIVE_31 256.7
B_CELL_NAIVE_32 253.7
B_CELL_NAIVE_33 247.5
B_CELL_NAIVE_34 246.6
B_CELL_NAIVE_35 246.0
B_CELL_NAIVE_36 245.9
B_CELL_NAIVE_37 243.9
B_CELL_NAIVE_38 239.2
B_CELL_NAIVE_39 239.2
B_CELL_NAIVE_40 233.4
B_CELL_NAIVE_41 231.5
B_CELL_NAIVE_42 229.2
B_CELL_NAIVE_43 227.3
B_CELL_NAIVE_44 225.6
B_CELL_NAIVE_45 221.5
B_CELL_NAIVE_46 214.8
B_CELL_NAIVE_47 214.0
B_CELL_NAIVE_48 203.3
B_CELL_NAIVE_49 198.8
B_CELL_NAIVE_50 198.4
B_CELL_NAIVE_51 196.8
B_CELL_NAIVE_52 193.1
B_CELL_NAIVE_53 190.4
B_CELL_NAIVE_54 189.6
B_CELL_NAIVE_55 186.5
B_CELL_NAIVE_56 179.7
B_CELL_NAIVE_57 178.6
B_CELL_NAIVE_58 171.7
B_CELL_NAIVE_59 170.5
B_CELL_NAIVE_60 167.8
B_CELL_NAIVE_61 164.9
B_CELL_NAIVE_62 164.1
B_CELL_NAIVE_63 151.8
B_CELL_NAIVE_64 150.9
B_CELL_NAIVE_65 148.0
B_CELL_NAIVE_66 146.1
B_CELL_NAIVE_67 141.1
B_CELL_NAIVE_68 139.0
B_CELL_NAIVE_69 138.4
B_CELL_NAIVE_70 136.4
B_CELL_NAIVE_71 131.1
B_CELL_NAIVE_72 128.2
B_CELL_NAIVE_73 127.2
B_CELL_NAIVE_74 124.4
B_CELL_NAIVE_75 123.9
B_CELL_NAIVE_76 118.1
B_CELL_NAIVE_77 116.1
B_CELL_NAIVE_78 115.4
B_CELL_NAIVE_79 114.9
B_CELL_NAIVE_80 114.1
B_CELL_NAIVE_81 99.3
B_CELL_NAIVE_82 97.2
B_CELL_NAIVE_83 87.6
B_CELL_NAIVE_84 82.6
B_CELL_NAIVE_85 76.8
B_CELL_NAIVE_86 61.0
B_CELL_NAIVE_87 54.7
B_CELL_NAIVE_88 43.8
B_CELL_NAIVE_89 38.0
B_CELL_NAIVE_90 36.4
B_CELL_NAIVE_91 36.2
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