A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
115.4
nTPM
Monaco:
274.8
nTPM
Schmiedel:
209.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
115.4
HPA sample
nTPM
Memory B-cell nTPM: 115.4
Samples: 6
Max nTPM: 341.4
Min nTPM: 42.0
P10809_1017
100.4
P10809_1025
65.5
P10809_1044
341.4
P10809_1063
42.0
P10809_1092
59.2
P10809_1105
84.0
Naive B-cell nTPM: 115.3
Samples: 6
Max nTPM: 263.2
Min nTPM: 49.3
P10809_1011
114.9
P10809_1029
88.6
P10809_1048
263.2
P10809_1067
49.3
P10809_1091
80.7
P10809_1104
94.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
274.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 216.0
Samples: 4
Max nTPM: 341.5
Min nTPM: 158.1
RHH5310_R3677
183.3
RHH5218_R3590
158.1
RHH5247_R3619
181.0
RHH5276_R3648
341.5
Naive B-cell nTPM: 218.4
Samples: 4
Max nTPM: 252.8
Min nTPM: 173.9
RHH5308_R3675
252.8
RHH5216_R3588
173.9
RHH5245_R3617
219.2
RHH5274_R3646
227.5
Non-switched memory B-cell nTPM: 174.5
Samples: 4
Max nTPM: 220.1
Min nTPM: 98.9
RHH5309_R3676
213.1
RHH5217_R3589
165.9
RHH5246_R3618
98.9
RHH5275_R3647
220.1
Plasmablast nTPM: 274.8
Samples: 4
Max nTPM: 316.7
Min nTPM: 238.8
RHH5312_R3679
238.8
RHH5220_R3592
254.8
RHH5249_R3621
289.0
RHH5278_R3650
316.7
Switched memory B-cell nTPM: 214.7
Samples: 4
Max nTPM: 265.2
Min nTPM: 121.5
RHH5311_R3678
265.2
RHH5219_R3591
209.0
RHH5248_R3620
121.5
RHH5277_R3649
263.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
209.3
Schmiedel sample id
TPM
Naive B-cell TPM: 209.3
Samples: 91
Max TPM: 411.4
Min TPM: 36.2
B_CELL_NAIVE_1
411.4
B_CELL_NAIVE_2
380.5
B_CELL_NAIVE_3
373.2
B_CELL_NAIVE_4
349.8
B_CELL_NAIVE_5
342.7
B_CELL_NAIVE_6
338.2
B_CELL_NAIVE_7
334.3
B_CELL_NAIVE_8
333.4
B_CELL_NAIVE_9
333.3
B_CELL_NAIVE_10
327.3
B_CELL_NAIVE_11
316.9
B_CELL_NAIVE_12
316.3
B_CELL_NAIVE_13
312.6
B_CELL_NAIVE_14
310.4
B_CELL_NAIVE_15
293.4
B_CELL_NAIVE_16
290.7
B_CELL_NAIVE_17
289.6
B_CELL_NAIVE_18
286.6
B_CELL_NAIVE_19
284.6
B_CELL_NAIVE_20
283.5
B_CELL_NAIVE_21
280.2
B_CELL_NAIVE_22
276.8
B_CELL_NAIVE_23
275.5
B_CELL_NAIVE_24
274.0
B_CELL_NAIVE_25
267.6
B_CELL_NAIVE_26
267.3
B_CELL_NAIVE_27
265.3
B_CELL_NAIVE_28
264.4
B_CELL_NAIVE_29
261.6
B_CELL_NAIVE_30
259.6
B_CELL_NAIVE_31
256.7
B_CELL_NAIVE_32
253.7
B_CELL_NAIVE_33
247.5
B_CELL_NAIVE_34
246.6
B_CELL_NAIVE_35
246.0
B_CELL_NAIVE_36
245.9
B_CELL_NAIVE_37
243.9
B_CELL_NAIVE_38
239.2
B_CELL_NAIVE_39
239.2
B_CELL_NAIVE_40
233.4
B_CELL_NAIVE_41
231.5
B_CELL_NAIVE_42
229.2
B_CELL_NAIVE_43
227.3
B_CELL_NAIVE_44
225.6
B_CELL_NAIVE_45
221.5
B_CELL_NAIVE_46
214.8
B_CELL_NAIVE_47
214.0
B_CELL_NAIVE_48
203.3
B_CELL_NAIVE_49
198.8
B_CELL_NAIVE_50
198.4
B_CELL_NAIVE_51
196.8
B_CELL_NAIVE_52
193.1
B_CELL_NAIVE_53
190.4
B_CELL_NAIVE_54
189.6
B_CELL_NAIVE_55
186.5
B_CELL_NAIVE_56
179.7
B_CELL_NAIVE_57
178.6
B_CELL_NAIVE_58
171.7
B_CELL_NAIVE_59
170.5
B_CELL_NAIVE_60
167.8
B_CELL_NAIVE_61
164.9
B_CELL_NAIVE_62
164.1
B_CELL_NAIVE_63
151.8
B_CELL_NAIVE_64
150.9
B_CELL_NAIVE_65
148.0
B_CELL_NAIVE_66
146.1
B_CELL_NAIVE_67
141.1
B_CELL_NAIVE_68
139.0
B_CELL_NAIVE_69
138.4
B_CELL_NAIVE_70
136.4
B_CELL_NAIVE_71
131.1
B_CELL_NAIVE_72
128.2
B_CELL_NAIVE_73
127.2
B_CELL_NAIVE_74
124.4
B_CELL_NAIVE_75
123.9
B_CELL_NAIVE_76
118.1
B_CELL_NAIVE_77
116.1
B_CELL_NAIVE_78
115.4
B_CELL_NAIVE_79
114.9
B_CELL_NAIVE_80
114.1
B_CELL_NAIVE_81
99.3
B_CELL_NAIVE_82
97.2
B_CELL_NAIVE_83
87.6
B_CELL_NAIVE_84
82.6
B_CELL_NAIVE_85
76.8
B_CELL_NAIVE_86
61.0
B_CELL_NAIVE_87
54.7
B_CELL_NAIVE_88
43.8
B_CELL_NAIVE_89
38.0
B_CELL_NAIVE_90
36.4
B_CELL_NAIVE_91
36.2
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