A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
38.7
nTPM
Monaco:
229.9
nTPM
Schmiedel:
342.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.7
HPA sample
nTPM
NK-cell nTPM: 38.7
Samples: 6
Max nTPM: 71.0
Min nTPM: 26.0
P10809_1013
52.0
P10809_1033
26.3
P10809_1052
27.8
P10809_1071
26.0
P10809_1093
28.8
P10809_1103
71.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
229.9
Monaco sample
nTPM
NK-cell nTPM: 229.9
Samples: 4
Max nTPM: 271.5
Min nTPM: 202.8
RHH5316_R3683
271.5
RHH5224_R3596
202.8
RHH5253_R3625
224.9
RHH5282_R3654
220.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
342.6
Schmiedel sample id
TPM
NK-cell TPM: 342.6
Samples: 90
Max TPM: 677.9
Min TPM: 94.3
NK_1
677.9
NK_2
659.6
NK_3
643.4
NK_4
627.7
NK_5
613.4
NK_6
564.7
NK_7
557.3
NK_8
549.0
NK_9
537.3
NK_10
523.4
NK_11
496.4
NK_12
494.0
NK_13
489.8
NK_14
480.4
NK_15
472.7
NK_16
466.2
NK_17
461.1
NK_18
459.6
NK_19
453.1
NK_20
451.4
NK_21
449.9
NK_22
446.6
NK_23
446.3
NK_24
444.6
NK_25
443.5
NK_26
439.3
NK_27
438.2
NK_28
431.0
NK_29
424.6
NK_30
413.0
NK_31
407.9
NK_32
403.9
NK_33
403.2
NK_34
392.4
NK_35
384.7
NK_36
383.2
NK_37
374.6
NK_38
373.0
NK_39
372.5
NK_40
369.5
NK_41
356.7
NK_42
345.9
NK_43
342.8
NK_44
340.9
NK_45
329.4
NK_46
320.9
NK_47
320.9
NK_48
320.4
NK_49
317.0
NK_50
313.5
NK_51
309.1
NK_52
302.2
NK_53
294.3
NK_54
292.0
NK_55
283.8
NK_56
268.7
NK_57
267.9
NK_58
265.8
NK_59
265.8
NK_60
264.4
NK_61
264.4
NK_62
260.3
NK_63
256.5
NK_64
255.4
NK_65
249.9
NK_66
242.9
NK_67
241.1
NK_68
237.7
NK_69
235.9
NK_70
234.9
NK_71
234.5
NK_72
225.8
NK_73
215.6
NK_74
207.1
NK_75
205.6
NK_76
204.0
NK_77
202.1
NK_78
191.1
NK_79
176.5
NK_80
176.0
NK_81
173.0
NK_82
164.4
NK_83
156.0
NK_84
131.2
NK_85
126.2
NK_86
118.4
NK_87
108.0
NK_88
103.1
NK_89
102.9
NK_90
94.3
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