A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
154.9
nTPM
Monaco:
302.0
nTPM
Schmiedel:
233.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
154.9
HPA sample
nTPM
Classical monocyte nTPM: 108.8
Samples: 6
Max nTPM: 165.0
Min nTPM: 64.8
P10809_1003
132.9
P10809_1020
87.4
P10809_1039
134.5
P10809_1058
64.8
P10809_1080
68.1
P10809_1107
165.0
Intermediate monocyte nTPM: 154.9
Samples: 6
Max nTPM: 375.7
Min nTPM: 54.1
P10809_1004
224.6
P10809_1023
90.9
P10809_1042
101.7
P10809_1061
54.1
P10809_1081
82.4
P10809_1108
375.7
Non-classical monocyte nTPM: 149.1
Samples: 5
Max nTPM: 309.1
Min nTPM: 31.0
P10809_1005
257.7
P10809_1053
65.9
P10809_1072
31.0
P10809_1082
81.7
P10809_1109
309.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
302.0
Monaco sample
nTPM
Classical monocyte nTPM: 241.5
Samples: 4
Max nTPM: 280.7
Min nTPM: 195.3
RHH5313_R3680
280.7
RHH5221_R3593
256.8
RHH5250_R3622
195.3
RHH5279_R3651
233.4
Intermediate monocyte nTPM: 301.9
Samples: 4
Max nTPM: 403.0
Min nTPM: 207.5
RHH5314_R3681
336.0
RHH5222_R3594
403.0
RHH5251_R3623
261.2
RHH5280_R3652
207.5
Non-classical monocyte nTPM: 215.6
Samples: 4
Max nTPM: 287.1
Min nTPM: 175.7
RHH5315_R3682
287.1
RHH5223_R3595
214.9
RHH5252_R3624
184.7
RHH5281_R3653
175.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
233.5
Schmiedel sample id
TPM
Classical monocyte TPM: 233.5
Samples: 91
Max TPM: 429.9
Min TPM: 88.2
MONOCYTES_1
429.9
MONOCYTES_2
398.6
MONOCYTES_3
387.4
MONOCYTES_4
375.1
MONOCYTES_5
371.7
MONOCYTES_6
369.4
MONOCYTES_7
366.3
MONOCYTES_8
366.0
MONOCYTES_9
353.1
MONOCYTES_10
346.3
MONOCYTES_11
346.1
MONOCYTES_12
340.7
MONOCYTES_13
336.1
MONOCYTES_14
333.5
MONOCYTES_15
331.6
MONOCYTES_16
330.8
MONOCYTES_17
330.0
MONOCYTES_18
317.4
MONOCYTES_19
316.9
MONOCYTES_20
316.4
MONOCYTES_21
312.0
MONOCYTES_22
310.6
MONOCYTES_23
305.2
MONOCYTES_24
305.0
MONOCYTES_25
303.2
MONOCYTES_26
302.4
MONOCYTES_27
301.4
MONOCYTES_28
291.5
MONOCYTES_29
288.1
MONOCYTES_30
285.1
MONOCYTES_31
283.1
MONOCYTES_32
281.9
MONOCYTES_33
276.9
MONOCYTES_34
274.1
MONOCYTES_35
269.5
MONOCYTES_36
256.6
MONOCYTES_37
248.7
MONOCYTES_38
246.5
MONOCYTES_39
242.9
MONOCYTES_40
239.6
MONOCYTES_41
238.2
MONOCYTES_42
230.4
MONOCYTES_43
224.5
MONOCYTES_44
219.0
MONOCYTES_45
217.7
MONOCYTES_46
216.6
MONOCYTES_47
216.1
MONOCYTES_48
214.6
MONOCYTES_49
213.3
MONOCYTES_50
207.4
MONOCYTES_51
206.7
MONOCYTES_52
205.4
MONOCYTES_53
199.3
MONOCYTES_54
194.7
MONOCYTES_55
194.1
MONOCYTES_56
194.0
MONOCYTES_57
191.1
MONOCYTES_58
189.7
MONOCYTES_59
187.7
MONOCYTES_60
183.7
MONOCYTES_61
178.8
MONOCYTES_62
177.4
MONOCYTES_63
177.1
MONOCYTES_64
176.9
MONOCYTES_65
175.6
MONOCYTES_66
175.3
MONOCYTES_67
168.1
MONOCYTES_68
165.9
MONOCYTES_69
162.4
MONOCYTES_70
162.0
MONOCYTES_71
160.7
MONOCYTES_72
158.7
MONOCYTES_73
156.7
MONOCYTES_74
154.9
MONOCYTES_75
151.3
MONOCYTES_76
143.3
MONOCYTES_77
136.8
MONOCYTES_78
132.2
MONOCYTES_79
131.7
MONOCYTES_80
131.0
MONOCYTES_81
128.0
MONOCYTES_82
126.6
MONOCYTES_83
124.4
MONOCYTES_84
120.1
MONOCYTES_85
116.7
MONOCYTES_86
113.3
MONOCYTES_87
108.8
MONOCYTES_88
107.6
MONOCYTES_89
102.6
MONOCYTES_90
101.1
MONOCYTES_91
88.2
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Non-classical monocyte TPM: 180.6
Samples: 90
Max TPM: 353.9
Min TPM: 35.9
M2_1
353.9
M2_2
340.5
M2_3
331.7
M2_4
320.2
M2_5
309.5
M2_6
299.1
M2_7
293.2
M2_8
290.7
M2_9
286.0
M2_10
282.5
M2_11
277.2
M2_12
268.3
M2_13
265.1
M2_14
264.2
M2_15
263.0
M2_16
261.0
M2_17
257.3
M2_18
255.0
M2_19
250.9
M2_20
248.0
M2_21
246.6
M2_22
242.6
M2_23
242.1
M2_24
241.3
M2_25
239.6
M2_26
236.0
M2_27
233.4
M2_28
231.2
M2_29
231.1
M2_30
229.3
M2_31
226.3
M2_32
221.5
M2_33
218.2
M2_34
211.8
M2_35
209.5
M2_36
208.3
M2_37
202.4
M2_38
198.7
M2_39
196.7
M2_40
192.3
M2_41
189.0
M2_42
181.3
M2_43
181.2
M2_44
174.4
M2_45
171.9
M2_46
170.0
M2_47
169.6
M2_48
168.0
M2_49
167.6
M2_50
167.4
M2_51
167.4
M2_52
166.6
M2_53
164.1
M2_54
158.9
M2_55
153.3
M2_56
151.6
M2_57
151.3
M2_58
144.9
M2_59
144.2
M2_60
142.5
M2_61
140.4
M2_62
138.8
M2_63
130.9
M2_64
129.8
M2_65
129.3
M2_66
124.6
M2_67
122.4
M2_68
120.3
M2_69
117.4
M2_70
111.2
M2_71
111.0
M2_72
105.8
M2_73
105.4
M2_74
102.7
M2_75
95.6
M2_76
92.6
M2_77
87.3
M2_78
86.7
M2_79
84.9
M2_80
77.6
M2_81
77.5
M2_82
75.8
M2_83
73.6
M2_84
62.7
M2_85
60.1
M2_86
56.6
M2_87
49.6
M2_88
45.3
M2_89
44.0
M2_90
35.9
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