A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.8
nTPM
Monaco:
140.8
nTPM
Schmiedel:
69.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.8
HPA sample
nTPM
Memory B-cell nTPM: 15.8
Samples: 6
Max nTPM: 24.5
Min nTPM: 6.9
P10809_1017
15.0
P10809_1025
24.5
P10809_1044
6.9
P10809_1063
15.8
P10809_1092
19.8
P10809_1105
12.5
Naive B-cell nTPM: 14.5
Samples: 6
Max nTPM: 18.7
Min nTPM: 9.0
P10809_1011
15.5
P10809_1029
16.0
P10809_1048
12.0
P10809_1067
9.0
P10809_1091
18.7
P10809_1104
15.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
140.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 107.6
Samples: 4
Max nTPM: 123.6
Min nTPM: 98.2
RHH5310_R3677
98.2
RHH5218_R3590
98.3
RHH5247_R3619
123.6
RHH5276_R3648
110.3
Naive B-cell nTPM: 139.7
Samples: 4
Max nTPM: 183.0
Min nTPM: 96.5
RHH5308_R3675
96.5
RHH5216_R3588
183.0
RHH5245_R3617
173.0
RHH5274_R3646
106.2
Non-switched memory B-cell nTPM: 140.8
Samples: 4
Max nTPM: 157.4
Min nTPM: 118.7
RHH5309_R3676
118.7
RHH5217_R3589
151.5
RHH5246_R3618
157.4
RHH5275_R3647
135.7
Plasmablast nTPM: 99.7
Samples: 4
Max nTPM: 113.1
Min nTPM: 86.0
RHH5312_R3679
104.3
RHH5220_R3592
113.1
RHH5249_R3621
86.0
RHH5278_R3650
95.4
Switched memory B-cell nTPM: 120.7
Samples: 4
Max nTPM: 128.9
Min nTPM: 111.4
RHH5311_R3678
128.9
RHH5219_R3591
127.3
RHH5248_R3620
115.3
RHH5277_R3649
111.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.8
Schmiedel sample id
TPM
Naive B-cell TPM: 69.8
Samples: 91
Max TPM: 93.5
Min TPM: 52.4
B_CELL_NAIVE_1
93.5
B_CELL_NAIVE_2
93.1
B_CELL_NAIVE_3
92.3
B_CELL_NAIVE_4
91.6
B_CELL_NAIVE_5
89.9
B_CELL_NAIVE_6
88.9
B_CELL_NAIVE_7
84.5
B_CELL_NAIVE_8
83.7
B_CELL_NAIVE_9
81.3
B_CELL_NAIVE_10
79.5
B_CELL_NAIVE_11
79.1
B_CELL_NAIVE_12
79.0
B_CELL_NAIVE_13
78.9
B_CELL_NAIVE_14
76.5
B_CELL_NAIVE_15
76.5
B_CELL_NAIVE_16
76.4
B_CELL_NAIVE_17
76.4
B_CELL_NAIVE_18
75.8
B_CELL_NAIVE_19
75.1
B_CELL_NAIVE_20
74.6
B_CELL_NAIVE_21
74.1
B_CELL_NAIVE_22
74.1
B_CELL_NAIVE_23
74.0
B_CELL_NAIVE_24
73.8
B_CELL_NAIVE_25
73.7
B_CELL_NAIVE_26
73.5
B_CELL_NAIVE_27
72.9
B_CELL_NAIVE_28
72.7
B_CELL_NAIVE_29
72.5
B_CELL_NAIVE_30
72.4
B_CELL_NAIVE_31
72.3
B_CELL_NAIVE_32
72.1
B_CELL_NAIVE_33
71.8
B_CELL_NAIVE_34
71.3
B_CELL_NAIVE_35
71.2
B_CELL_NAIVE_36
70.4
B_CELL_NAIVE_37
69.9
B_CELL_NAIVE_38
69.8
B_CELL_NAIVE_39
69.7
B_CELL_NAIVE_40
69.3
B_CELL_NAIVE_41
69.2
B_CELL_NAIVE_42
69.2
B_CELL_NAIVE_43
69.0
B_CELL_NAIVE_44
69.0
B_CELL_NAIVE_45
69.0
B_CELL_NAIVE_46
68.8
B_CELL_NAIVE_47
68.3
B_CELL_NAIVE_48
68.2
B_CELL_NAIVE_49
68.1
B_CELL_NAIVE_50
68.1
B_CELL_NAIVE_51
67.9
B_CELL_NAIVE_52
67.5
B_CELL_NAIVE_53
67.2
B_CELL_NAIVE_54
66.4
B_CELL_NAIVE_55
66.2
B_CELL_NAIVE_56
66.1
B_CELL_NAIVE_57
65.9
B_CELL_NAIVE_58
65.9
B_CELL_NAIVE_59
65.8
B_CELL_NAIVE_60
65.2
B_CELL_NAIVE_61
65.2
B_CELL_NAIVE_62
65.1
B_CELL_NAIVE_63
64.6
B_CELL_NAIVE_64
64.6
B_CELL_NAIVE_65
64.5
B_CELL_NAIVE_66
64.4
B_CELL_NAIVE_67
64.2
B_CELL_NAIVE_68
63.8
B_CELL_NAIVE_69
63.6
B_CELL_NAIVE_70
63.4
B_CELL_NAIVE_71
63.4
B_CELL_NAIVE_72
63.4
B_CELL_NAIVE_73
63.3
B_CELL_NAIVE_74
63.2
B_CELL_NAIVE_75
63.2
B_CELL_NAIVE_76
62.9
B_CELL_NAIVE_77
62.8
B_CELL_NAIVE_78
62.4
B_CELL_NAIVE_79
61.3
B_CELL_NAIVE_80
60.9
B_CELL_NAIVE_81
60.2
B_CELL_NAIVE_82
59.9
B_CELL_NAIVE_83
59.6
B_CELL_NAIVE_84
59.5
B_CELL_NAIVE_85
59.5
B_CELL_NAIVE_86
59.1
B_CELL_NAIVE_87
58.5
B_CELL_NAIVE_88
58.3
B_CELL_NAIVE_89
58.2
B_CELL_NAIVE_90
56.6
B_CELL_NAIVE_91
52.4
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