A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.9
nTPM
Monaco:
113.4
nTPM
Schmiedel:
62.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
HPA sample
nTPM
NK-cell nTPM: 15.9
Samples: 6
Max nTPM: 24.4
Min nTPM: 8.4
P10809_1013
11.8
P10809_1033
19.6
P10809_1052
19.1
P10809_1071
11.9
P10809_1093
24.4
P10809_1103
8.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.4
Monaco sample
nTPM
NK-cell nTPM: 113.5
Samples: 4
Max nTPM: 123.8
Min nTPM: 96.0
RHH5316_R3683
96.0
RHH5224_R3596
114.9
RHH5253_R3625
119.1
RHH5282_R3654
123.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.5
Schmiedel sample id
TPM
NK-cell TPM: 62.5
Samples: 90
Max TPM: 81.4
Min TPM: 42.6
NK_1
81.4
NK_2
80.8
NK_3
77.5
NK_4
76.7
NK_5
75.1
NK_6
74.3
NK_7
73.7
NK_8
73.6
NK_9
73.4
NK_10
72.9
NK_11
72.7
NK_12
72.3
NK_13
69.6
NK_14
69.0
NK_15
68.8
NK_16
68.4
NK_17
68.4
NK_18
68.1
NK_19
67.7
NK_20
67.3
NK_21
67.2
NK_22
66.8
NK_23
66.5
NK_24
66.3
NK_25
66.2
NK_26
66.1
NK_27
65.3
NK_28
65.1
NK_29
65.1
NK_30
64.2
NK_31
64.1
NK_32
63.6
NK_33
63.6
NK_34
63.5
NK_35
63.5
NK_36
63.4
NK_37
63.4
NK_38
63.3
NK_39
63.1
NK_40
62.9
NK_41
62.9
NK_42
62.5
NK_43
62.4
NK_44
62.4
NK_45
62.3
NK_46
62.3
NK_47
62.2
NK_48
62.1
NK_49
61.8
NK_50
61.6
NK_51
61.5
NK_52
61.4
NK_53
60.8
NK_54
60.7
NK_55
60.7
NK_56
60.7
NK_57
60.3
NK_58
59.8
NK_59
59.6
NK_60
59.5
NK_61
59.4
NK_62
59.3
NK_63
59.2
NK_64
59.0
NK_65
58.9
NK_66
58.4
NK_67
58.3
NK_68
57.8
NK_69
57.7
NK_70
57.5
NK_71
57.1
NK_72
57.0
NK_73
56.8
NK_74
56.6
NK_75
56.6
NK_76
56.2
NK_77
55.9
NK_78
55.2
NK_79
55.0
NK_80
54.7
NK_81
54.4
NK_82
53.5
NK_83
53.1
NK_84
51.5
NK_85
50.7
NK_86
50.3
NK_87
49.9
NK_88
49.9
NK_89
49.4
NK_90
42.6
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