A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.8
nTPM
Monaco:
68.3
nTPM
Schmiedel:
61.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.8
HPA sample
nTPM
Memory B-cell nTPM: 4.4
Samples: 6
Max nTPM: 9.4
Min nTPM: 0.7
P10809_1017
4.2
P10809_1025
4.1
P10809_1044
0.7
P10809_1063
9.4
P10809_1092
2.4
P10809_1105
5.4
Naive B-cell nTPM: 5.8
Samples: 6
Max nTPM: 7.7
Min nTPM: 3.0
P10809_1011
3.0
P10809_1029
6.2
P10809_1048
3.1
P10809_1067
7.7
P10809_1091
7.3
P10809_1104
7.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 47.6
Samples: 4
Max nTPM: 54.4
Min nTPM: 44.3
RHH5310_R3677
44.3
RHH5218_R3590
45.1
RHH5247_R3619
46.7
RHH5276_R3648
54.4
Naive B-cell nTPM: 66.8
Samples: 4
Max nTPM: 77.8
Min nTPM: 55.3
RHH5308_R3675
59.1
RHH5216_R3588
55.3
RHH5245_R3617
74.9
RHH5274_R3646
77.8
Non-switched memory B-cell nTPM: 68.3
Samples: 4
Max nTPM: 100.0
Min nTPM: 51.3
RHH5309_R3676
51.3
RHH5217_R3589
100.0
RHH5246_R3618
56.7
RHH5275_R3647
65.1
Plasmablast nTPM: 37.0
Samples: 4
Max nTPM: 51.1
Min nTPM: 19.0
RHH5312_R3679
51.1
RHH5220_R3592
36.0
RHH5249_R3621
19.0
RHH5278_R3650
41.9
Switched memory B-cell nTPM: 53.0
Samples: 4
Max nTPM: 72.0
Min nTPM: 35.8
RHH5311_R3678
35.8
RHH5219_R3591
57.9
RHH5248_R3620
46.4
RHH5277_R3649
72.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.1
Schmiedel sample id
TPM
Naive B-cell TPM: 61.1
Samples: 91
Max TPM: 92.7
Min TPM: 36.0
B_CELL_NAIVE_1
92.7
B_CELL_NAIVE_2
86.8
B_CELL_NAIVE_3
86.1
B_CELL_NAIVE_4
85.5
B_CELL_NAIVE_5
83.0
B_CELL_NAIVE_6
81.9
B_CELL_NAIVE_7
79.3
B_CELL_NAIVE_8
75.7
B_CELL_NAIVE_9
75.4
B_CELL_NAIVE_10
71.5
B_CELL_NAIVE_11
71.4
B_CELL_NAIVE_12
70.7
B_CELL_NAIVE_13
70.6
B_CELL_NAIVE_14
69.1
B_CELL_NAIVE_15
69.1
B_CELL_NAIVE_16
69.1
B_CELL_NAIVE_17
68.6
B_CELL_NAIVE_18
68.5
B_CELL_NAIVE_19
68.2
B_CELL_NAIVE_20
67.7
B_CELL_NAIVE_21
67.4
B_CELL_NAIVE_22
66.8
B_CELL_NAIVE_23
66.0
B_CELL_NAIVE_24
65.9
B_CELL_NAIVE_25
65.4
B_CELL_NAIVE_26
65.1
B_CELL_NAIVE_27
64.3
B_CELL_NAIVE_28
64.3
B_CELL_NAIVE_29
63.9
B_CELL_NAIVE_30
63.6
B_CELL_NAIVE_31
63.2
B_CELL_NAIVE_32
63.1
B_CELL_NAIVE_33
62.6
B_CELL_NAIVE_34
62.1
B_CELL_NAIVE_35
61.5
B_CELL_NAIVE_36
61.4
B_CELL_NAIVE_37
61.3
B_CELL_NAIVE_38
61.1
B_CELL_NAIVE_39
61.0
B_CELL_NAIVE_40
61.0
B_CELL_NAIVE_41
60.9
B_CELL_NAIVE_42
60.8
B_CELL_NAIVE_43
60.5
B_CELL_NAIVE_44
60.5
B_CELL_NAIVE_45
60.3
B_CELL_NAIVE_46
60.2
B_CELL_NAIVE_47
60.1
B_CELL_NAIVE_48
60.1
B_CELL_NAIVE_49
60.1
B_CELL_NAIVE_50
60.1
B_CELL_NAIVE_51
59.8
B_CELL_NAIVE_52
59.7
B_CELL_NAIVE_53
59.5
B_CELL_NAIVE_54
59.5
B_CELL_NAIVE_55
58.9
B_CELL_NAIVE_56
58.8
B_CELL_NAIVE_57
58.7
B_CELL_NAIVE_58
58.6
B_CELL_NAIVE_59
57.3
B_CELL_NAIVE_60
57.0
B_CELL_NAIVE_61
56.7
B_CELL_NAIVE_62
56.7
B_CELL_NAIVE_63
56.5
B_CELL_NAIVE_64
56.4
B_CELL_NAIVE_65
56.2
B_CELL_NAIVE_66
56.0
B_CELL_NAIVE_67
55.1
B_CELL_NAIVE_68
54.8
B_CELL_NAIVE_69
54.5
B_CELL_NAIVE_70
54.5
B_CELL_NAIVE_71
54.4
B_CELL_NAIVE_72
54.3
B_CELL_NAIVE_73
53.4
B_CELL_NAIVE_74
53.2
B_CELL_NAIVE_75
52.8
B_CELL_NAIVE_76
51.7
B_CELL_NAIVE_77
51.4
B_CELL_NAIVE_78
51.4
B_CELL_NAIVE_79
51.3
B_CELL_NAIVE_80
51.2
B_CELL_NAIVE_81
50.7
B_CELL_NAIVE_82
50.3
B_CELL_NAIVE_83
47.7
B_CELL_NAIVE_84
47.3
B_CELL_NAIVE_85
46.2
B_CELL_NAIVE_86
46.0
B_CELL_NAIVE_87
45.9
B_CELL_NAIVE_88
43.7
B_CELL_NAIVE_89
43.3
B_CELL_NAIVE_90
43.0
B_CELL_NAIVE_91
36.0
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The Human Protein Atlas project is funded
