A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.3
nTPM
Monaco:
64.3
nTPM
Schmiedel:
49.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.3
HPA sample
nTPM
Classical monocyte nTPM: 4.6
Samples: 6
Max nTPM: 6.7
Min nTPM: 3.0
P10809_1003
3.2
P10809_1020
5.9
P10809_1039
4.9
P10809_1058
3.8
P10809_1080
6.7
P10809_1107
3.0
Intermediate monocyte nTPM: 7.3
Samples: 6
Max nTPM: 12.2
Min nTPM: 4.2
P10809_1004
5.7
P10809_1023
6.7
P10809_1042
6.4
P10809_1061
12.2
P10809_1081
8.8
P10809_1108
4.2
Non-classical monocyte nTPM: 6.7
Samples: 5
Max nTPM: 11.0
Min nTPM: 0.2
P10809_1005
6.9
P10809_1053
11.0
P10809_1072
0.2
P10809_1082
8.3
P10809_1109
7.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.3
Monaco sample
nTPM
Classical monocyte nTPM: 41.6
Samples: 4
Max nTPM: 45.6
Min nTPM: 32.2
RHH5313_R3680
45.3
RHH5221_R3593
43.1
RHH5250_R3622
45.6
RHH5279_R3651
32.2
Intermediate monocyte nTPM: 64.3
Samples: 4
Max nTPM: 72.0
Min nTPM: 52.0
RHH5314_R3681
52.0
RHH5222_R3594
71.7
RHH5251_R3623
72.0
RHH5280_R3652
61.5
Non-classical monocyte nTPM: 63.0
Samples: 4
Max nTPM: 74.5
Min nTPM: 57.1
RHH5315_R3682
60.7
RHH5223_R3595
57.1
RHH5252_R3624
74.5
RHH5281_R3653
59.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.3
Schmiedel sample id
TPM
Classical monocyte TPM: 21.3
Samples: 91
Max TPM: 27.9
Min TPM: 14.1
MONOCYTES_1
27.9
MONOCYTES_2
26.6
MONOCYTES_3
26.5
MONOCYTES_4
26.5
MONOCYTES_5
26.4
MONOCYTES_6
25.9
MONOCYTES_7
25.9
MONOCYTES_8
25.8
MONOCYTES_9
25.8
MONOCYTES_10
25.7
MONOCYTES_11
25.7
MONOCYTES_12
25.6
MONOCYTES_13
25.4
MONOCYTES_14
25.2
MONOCYTES_15
25.0
MONOCYTES_16
24.8
MONOCYTES_17
24.6
MONOCYTES_18
24.3
MONOCYTES_19
24.2
MONOCYTES_20
24.0
MONOCYTES_21
23.9
MONOCYTES_22
23.7
MONOCYTES_23
23.6
MONOCYTES_24
23.6
MONOCYTES_25
23.4
MONOCYTES_26
22.9
MONOCYTES_27
22.8
MONOCYTES_28
22.6
MONOCYTES_29
22.5
MONOCYTES_30
22.4
MONOCYTES_31
22.4
MONOCYTES_32
22.3
MONOCYTES_33
22.1
MONOCYTES_34
22.0
MONOCYTES_35
21.9
MONOCYTES_36
21.9
MONOCYTES_37
21.9
MONOCYTES_38
21.8
MONOCYTES_39
21.8
MONOCYTES_40
21.7
MONOCYTES_41
21.5
MONOCYTES_42
21.3
MONOCYTES_43
21.2
MONOCYTES_44
21.2
MONOCYTES_45
21.1
MONOCYTES_46
21.1
MONOCYTES_47
21.1
MONOCYTES_48
21.1
MONOCYTES_49
21.0
MONOCYTES_50
21.0
MONOCYTES_51
20.9
MONOCYTES_52
20.7
MONOCYTES_53
20.6
MONOCYTES_54
20.4
MONOCYTES_55
20.3
MONOCYTES_56
20.3
MONOCYTES_57
20.2
MONOCYTES_58
20.1
MONOCYTES_59
20.1
MONOCYTES_60
20.0
MONOCYTES_61
19.9
MONOCYTES_62
19.9
MONOCYTES_63
19.8
MONOCYTES_64
19.7
MONOCYTES_65
19.6
MONOCYTES_66
19.5
MONOCYTES_67
19.4
MONOCYTES_68
19.4
MONOCYTES_69
19.3
MONOCYTES_70
19.3
MONOCYTES_71
19.2
MONOCYTES_72
19.1
MONOCYTES_73
18.7
MONOCYTES_74
18.6
MONOCYTES_75
18.5
MONOCYTES_76
18.2
MONOCYTES_77
18.2
MONOCYTES_78
18.0
MONOCYTES_79
17.8
MONOCYTES_80
17.7
MONOCYTES_81
17.6
MONOCYTES_82
17.5
MONOCYTES_83
17.3
MONOCYTES_84
17.2
MONOCYTES_85
17.1
MONOCYTES_86
16.8
MONOCYTES_87
16.7
MONOCYTES_88
16.6
MONOCYTES_89
16.3
MONOCYTES_90
14.3
MONOCYTES_91
14.1
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Non-classical monocyte TPM: 49.3
Samples: 90
Max TPM: 70.6
Min TPM: 31.8
M2_1
70.6
M2_2
70.3
M2_3
70.2
M2_4
65.8
M2_5
63.9
M2_6
63.6
M2_7
63.5
M2_8
62.8
M2_9
62.7
M2_10
62.4
M2_11
61.7
M2_12
61.7
M2_13
60.3
M2_14
60.2
M2_15
59.5
M2_16
58.4
M2_17
56.4
M2_18
55.8
M2_19
55.5
M2_20
55.3
M2_21
54.9
M2_22
54.6
M2_23
54.5
M2_24
54.4
M2_25
54.3
M2_26
54.2
M2_27
53.6
M2_28
53.6
M2_29
53.5
M2_30
53.5
M2_31
53.1
M2_32
53.1
M2_33
52.8
M2_34
52.2
M2_35
52.0
M2_36
51.4
M2_37
51.0
M2_38
50.7
M2_39
49.7
M2_40
49.6
M2_41
49.6
M2_42
49.0
M2_43
49.0
M2_44
48.2
M2_45
48.1
M2_46
47.3
M2_47
47.3
M2_48
47.1
M2_49
46.5
M2_50
46.3
M2_51
46.1
M2_52
45.8
M2_53
45.6
M2_54
45.4
M2_55
45.1
M2_56
45.0
M2_57
44.8
M2_58
44.5
M2_59
44.3
M2_60
44.0
M2_61
44.0
M2_62
43.9
M2_63
43.9
M2_64
43.1
M2_65
43.1
M2_66
43.1
M2_67
43.0
M2_68
42.5
M2_69
42.2
M2_70
42.0
M2_71
42.0
M2_72
41.9
M2_73
41.7
M2_74
41.7
M2_75
41.2
M2_76
41.1
M2_77
41.1
M2_78
40.6
M2_79
40.2
M2_80
40.1
M2_81
40.0
M2_82
40.0
M2_83
39.9
M2_84
39.2
M2_85
38.1
M2_86
37.7
M2_87
36.7
M2_88
35.7
M2_89
33.2
M2_90
31.8
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