A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.0
nTPM
Monaco:
66.6
nTPM
Schmiedel:
46.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.0
HPA sample
nTPM
NK-cell nTPM: 4.0
Samples: 6
Max nTPM: 5.9
Min nTPM: 2.3
P10809_1013
3.0
P10809_1033
2.5
P10809_1052
5.9
P10809_1071
4.4
P10809_1093
2.3
P10809_1103
5.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.6
Monaco sample
nTPM
NK-cell nTPM: 66.6
Samples: 4
Max nTPM: 75.0
Min nTPM: 56.8
RHH5316_R3683
72.0
RHH5224_R3596
56.8
RHH5253_R3625
75.0
RHH5282_R3654
62.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.9
Schmiedel sample id
TPM
NK-cell TPM: 46.8
Samples: 90
Max TPM: 74.1
Min TPM: 25.5
NK_1
74.1
NK_2
69.9
NK_3
65.1
NK_4
64.7
NK_5
64.7
NK_6
63.8
NK_7
63.3
NK_8
62.8
NK_9
61.9
NK_10
57.7
NK_11
57.4
NK_12
57.3
NK_13
56.1
NK_14
55.7
NK_15
55.4
NK_16
54.4
NK_17
54.3
NK_18
54.3
NK_19
53.6
NK_20
52.8
NK_21
52.7
NK_22
52.7
NK_23
52.7
NK_24
51.8
NK_25
51.6
NK_26
50.9
NK_27
50.7
NK_28
50.2
NK_29
49.5
NK_30
49.4
NK_31
48.4
NK_32
48.3
NK_33
48.3
NK_34
48.1
NK_35
47.7
NK_36
47.6
NK_37
47.2
NK_38
47.2
NK_39
46.9
NK_40
46.8
NK_41
46.6
NK_42
46.5
NK_43
46.1
NK_44
45.9
NK_45
45.9
NK_46
45.6
NK_47
45.5
NK_48
44.5
NK_49
44.5
NK_50
44.4
NK_51
44.3
NK_52
44.1
NK_53
44.1
NK_54
43.8
NK_55
43.6
NK_56
43.2
NK_57
42.8
NK_58
42.6
NK_59
42.2
NK_60
42.0
NK_61
42.0
NK_62
42.0
NK_63
41.9
NK_64
41.6
NK_65
41.3
NK_66
40.6
NK_67
40.5
NK_68
40.0
NK_69
39.9
NK_70
39.9
NK_71
39.7
NK_72
39.6
NK_73
39.5
NK_74
39.5
NK_75
39.1
NK_76
39.0
NK_77
38.3
NK_78
38.0
NK_79
38.0
NK_80
37.7
NK_81
37.6
NK_82
37.4
NK_83
36.4
NK_84
36.3
NK_85
36.2
NK_86
35.5
NK_87
35.2
NK_88
32.5
NK_89
29.5
NK_90
25.5
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