A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
211.5
nTPM
Monaco:
646.4
nTPM
Schmiedel:
221.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
211.5
HPA sample
nTPM
Memory B-cell nTPM: 211.5
Samples: 6
Max nTPM: 240.5
Min nTPM: 179.1
P10809_1017
240.5
P10809_1025
224.6
P10809_1044
194.1
P10809_1063
179.1
P10809_1092
225.0
P10809_1105
205.6
Naive B-cell nTPM: 205.0
Samples: 6
Max nTPM: 316.7
Min nTPM: 168.1
P10809_1011
182.8
P10809_1029
168.1
P10809_1048
316.7
P10809_1067
168.4
P10809_1091
203.1
P10809_1104
191.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
646.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 646.4
Samples: 4
Max nTPM: 816.0
Min nTPM: 533.6
RHH5310_R3677
631.0
RHH5218_R3590
604.9
RHH5247_R3619
533.6
RHH5276_R3648
816.0
Naive B-cell nTPM: 563.6
Samples: 4
Max nTPM: 708.9
Min nTPM: 449.5
RHH5308_R3675
449.5
RHH5216_R3588
708.9
RHH5245_R3617
513.7
RHH5274_R3646
582.3
Non-switched memory B-cell nTPM: 581.1
Samples: 4
Max nTPM: 676.6
Min nTPM: 472.6
RHH5309_R3676
557.1
RHH5217_R3589
618.0
RHH5246_R3618
472.6
RHH5275_R3647
676.6
Plasmablast nTPM: 576.6
Samples: 4
Max nTPM: 613.0
Min nTPM: 529.3
RHH5312_R3679
529.3
RHH5220_R3592
596.9
RHH5249_R3621
567.3
RHH5278_R3650
613.0
Switched memory B-cell nTPM: 519.5
Samples: 4
Max nTPM: 565.8
Min nTPM: 450.8
RHH5311_R3678
450.8
RHH5219_R3591
527.5
RHH5248_R3620
565.8
RHH5277_R3649
533.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
221.4
Schmiedel sample id
TPM
Naive B-cell TPM: 221.4
Samples: 91
Max TPM: 371.7
Min TPM: 140.4
B_CELL_NAIVE_1
371.7
B_CELL_NAIVE_2
352.8
B_CELL_NAIVE_3
332.5
B_CELL_NAIVE_4
316.8
B_CELL_NAIVE_5
313.0
B_CELL_NAIVE_6
312.2
B_CELL_NAIVE_7
309.1
B_CELL_NAIVE_8
298.4
B_CELL_NAIVE_9
285.4
B_CELL_NAIVE_10
275.5
B_CELL_NAIVE_11
266.1
B_CELL_NAIVE_12
265.7
B_CELL_NAIVE_13
263.2
B_CELL_NAIVE_14
261.1
B_CELL_NAIVE_15
260.0
B_CELL_NAIVE_16
255.1
B_CELL_NAIVE_17
254.0
B_CELL_NAIVE_18
252.9
B_CELL_NAIVE_19
250.2
B_CELL_NAIVE_20
248.1
B_CELL_NAIVE_21
247.7
B_CELL_NAIVE_22
246.1
B_CELL_NAIVE_23
245.2
B_CELL_NAIVE_24
243.7
B_CELL_NAIVE_25
242.7
B_CELL_NAIVE_26
237.1
B_CELL_NAIVE_27
235.0
B_CELL_NAIVE_28
234.9
B_CELL_NAIVE_29
234.2
B_CELL_NAIVE_30
233.4
B_CELL_NAIVE_31
231.0
B_CELL_NAIVE_32
230.4
B_CELL_NAIVE_33
229.6
B_CELL_NAIVE_34
228.2
B_CELL_NAIVE_35
227.7
B_CELL_NAIVE_36
226.8
B_CELL_NAIVE_37
226.7
B_CELL_NAIVE_38
224.3
B_CELL_NAIVE_39
223.9
B_CELL_NAIVE_40
223.7
B_CELL_NAIVE_41
223.7
B_CELL_NAIVE_42
223.6
B_CELL_NAIVE_43
223.2
B_CELL_NAIVE_44
222.6
B_CELL_NAIVE_45
222.5
B_CELL_NAIVE_46
220.3
B_CELL_NAIVE_47
219.8
B_CELL_NAIVE_48
217.8
B_CELL_NAIVE_49
212.7
B_CELL_NAIVE_50
211.5
B_CELL_NAIVE_51
209.7
B_CELL_NAIVE_52
209.3
B_CELL_NAIVE_53
209.1
B_CELL_NAIVE_54
206.7
B_CELL_NAIVE_55
204.7
B_CELL_NAIVE_56
199.5
B_CELL_NAIVE_57
198.9
B_CELL_NAIVE_58
198.3
B_CELL_NAIVE_59
197.0
B_CELL_NAIVE_60
194.9
B_CELL_NAIVE_61
194.3
B_CELL_NAIVE_62
191.6
B_CELL_NAIVE_63
191.3
B_CELL_NAIVE_64
190.2
B_CELL_NAIVE_65
189.7
B_CELL_NAIVE_66
187.9
B_CELL_NAIVE_67
187.8
B_CELL_NAIVE_68
187.8
B_CELL_NAIVE_69
187.7
B_CELL_NAIVE_70
187.5
B_CELL_NAIVE_71
186.9
B_CELL_NAIVE_72
185.5
B_CELL_NAIVE_73
183.1
B_CELL_NAIVE_74
182.9
B_CELL_NAIVE_75
181.9
B_CELL_NAIVE_76
181.3
B_CELL_NAIVE_77
179.7
B_CELL_NAIVE_78
179.6
B_CELL_NAIVE_79
178.3
B_CELL_NAIVE_80
178.1
B_CELL_NAIVE_81
175.9
B_CELL_NAIVE_82
175.3
B_CELL_NAIVE_83
173.5
B_CELL_NAIVE_84
171.5
B_CELL_NAIVE_85
169.3
B_CELL_NAIVE_86
164.2
B_CELL_NAIVE_87
159.7
B_CELL_NAIVE_88
155.6
B_CELL_NAIVE_89
154.4
B_CELL_NAIVE_90
152.2
B_CELL_NAIVE_91
140.4
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