A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
178.1
nTPM
Monaco:
296.6
nTPM
Schmiedel:
139.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
178.1
HPA sample
nTPM
NK-cell nTPM: 178.2
Samples: 6
Max nTPM: 224.0
Min nTPM: 150.7
P10809_1013
167.5
P10809_1033
161.1
P10809_1052
150.7
P10809_1071
202.9
P10809_1093
224.0
P10809_1103
162.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
296.6
Monaco sample
nTPM
NK-cell nTPM: 296.6
Samples: 4
Max nTPM: 357.1
Min nTPM: 258.6
RHH5316_R3683
258.6
RHH5224_R3596
357.1
RHH5253_R3625
261.9
RHH5282_R3654
308.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
139.2
Schmiedel sample id
TPM
NK-cell TPM: 139.2
Samples: 90
Max TPM: 226.5
Min TPM: 98.2
NK_1
226.5
NK_2
214.1
NK_3
201.2
NK_4
189.5
NK_5
187.0
NK_6
181.5
NK_7
177.3
NK_8
176.6
NK_9
170.7
NK_10
164.9
NK_11
164.4
NK_12
163.9
NK_13
163.5
NK_14
159.8
NK_15
159.0
NK_16
158.7
NK_17
157.3
NK_18
156.7
NK_19
155.8
NK_20
152.9
NK_21
150.7
NK_22
149.8
NK_23
148.3
NK_24
148.1
NK_25
147.8
NK_26
147.5
NK_27
146.4
NK_28
146.0
NK_29
145.3
NK_30
144.8
NK_31
144.7
NK_32
144.3
NK_33
143.6
NK_34
143.5
NK_35
142.3
NK_36
140.2
NK_37
139.8
NK_38
137.8
NK_39
137.6
NK_40
137.0
NK_41
136.7
NK_42
136.3
NK_43
136.2
NK_44
135.6
NK_45
135.5
NK_46
135.4
NK_47
135.0
NK_48
134.5
NK_49
134.3
NK_50
133.5
NK_51
133.2
NK_52
131.9
NK_53
131.8
NK_54
131.3
NK_55
130.7
NK_56
130.5
NK_57
129.9
NK_58
129.4
NK_59
129.3
NK_60
128.3
NK_61
128.0
NK_62
126.6
NK_63
126.4
NK_64
126.4
NK_65
126.0
NK_66
124.7
NK_67
124.1
NK_68
123.9
NK_69
122.4
NK_70
121.4
NK_71
121.0
NK_72
120.2
NK_73
120.1
NK_74
119.9
NK_75
119.6
NK_76
118.5
NK_77
117.6
NK_78
116.9
NK_79
115.9
NK_80
115.4
NK_81
114.4
NK_82
114.3
NK_83
111.7
NK_84
110.7
NK_85
108.3
NK_86
108.0
NK_87
105.7
NK_88
100.7
NK_89
98.6
NK_90
98.2
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