A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
447.4
nTPM
Monaco:
1302.5
nTPM
Schmiedel:
615.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
447.4
HPA sample
nTPM
Classical monocyte nTPM: 281.4
Samples: 6
Max nTPM: 484.1
Min nTPM: 210.0
P10809_1003
484.1
P10809_1020
281.9
P10809_1039
271.4
P10809_1058
210.0
P10809_1080
223.7
P10809_1107
217.3
Intermediate monocyte nTPM: 348.0
Samples: 6
Max nTPM: 399.5
Min nTPM: 287.8
P10809_1004
391.7
P10809_1023
399.5
P10809_1042
369.9
P10809_1061
334.4
P10809_1081
287.8
P10809_1108
304.4
Non-classical monocyte nTPM: 447.4
Samples: 5
Max nTPM: 578.5
Min nTPM: 329.0
P10809_1005
524.9
P10809_1053
415.4
P10809_1072
578.5
P10809_1082
329.0
P10809_1109
389.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1302.5
Monaco sample
nTPM
Classical monocyte nTPM: 791.7
Samples: 4
Max nTPM: 951.3
Min nTPM: 643.0
RHH5313_R3680
643.0
RHH5221_R3593
951.3
RHH5250_R3622
862.3
RHH5279_R3651
710.1
Intermediate monocyte nTPM: 1108.7
Samples: 4
Max nTPM: 1344.8
Min nTPM: 847.9
RHH5314_R3681
847.9
RHH5222_R3594
1344.8
RHH5251_R3623
1124.6
RHH5280_R3652
1117.5
Non-classical monocyte nTPM: 1302.5
Samples: 4
Max nTPM: 1563.4
Min nTPM: 1102.8
RHH5315_R3682
1102.8
RHH5223_R3595
1563.4
RHH5252_R3624
1368.4
RHH5281_R3653
1175.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
615.4
Schmiedel sample id
TPM
Classical monocyte TPM: 313.1
Samples: 91
Max TPM: 436.6
Min TPM: 214.5
MONOCYTES_1
436.6
MONOCYTES_2
412.4
MONOCYTES_3
391.0
MONOCYTES_4
389.1
MONOCYTES_5
384.8
MONOCYTES_6
383.1
MONOCYTES_7
382.9
MONOCYTES_8
382.8
MONOCYTES_9
380.0
MONOCYTES_10
370.4
MONOCYTES_11
367.5
MONOCYTES_12
366.2
MONOCYTES_13
365.1
MONOCYTES_14
362.1
MONOCYTES_15
359.8
MONOCYTES_16
355.3
MONOCYTES_17
352.2
MONOCYTES_18
352.2
MONOCYTES_19
348.4
MONOCYTES_20
347.7
MONOCYTES_21
344.8
MONOCYTES_22
342.5
MONOCYTES_23
341.8
MONOCYTES_24
340.3
MONOCYTES_25
339.6
MONOCYTES_26
337.3
MONOCYTES_27
336.1
MONOCYTES_28
334.8
MONOCYTES_29
334.5
MONOCYTES_30
334.5
MONOCYTES_31
333.3
MONOCYTES_32
331.9
MONOCYTES_33
330.2
MONOCYTES_34
329.5
MONOCYTES_35
329.5
MONOCYTES_36
329.3
MONOCYTES_37
326.7
MONOCYTES_38
326.0
MONOCYTES_39
321.5
MONOCYTES_40
321.0
MONOCYTES_41
320.9
MONOCYTES_42
318.7
MONOCYTES_43
318.5
MONOCYTES_44
316.3
MONOCYTES_45
315.8
MONOCYTES_46
313.7
MONOCYTES_47
313.7
MONOCYTES_48
313.1
MONOCYTES_49
310.0
MONOCYTES_50
308.5
MONOCYTES_51
308.0
MONOCYTES_52
307.6
MONOCYTES_53
306.9
MONOCYTES_54
306.5
MONOCYTES_55
304.3
MONOCYTES_56
303.4
MONOCYTES_57
302.8
MONOCYTES_58
300.5
MONOCYTES_59
299.0
MONOCYTES_60
292.0
MONOCYTES_61
288.8
MONOCYTES_62
285.8
MONOCYTES_63
285.4
MONOCYTES_64
284.6
MONOCYTES_65
283.9
MONOCYTES_66
283.4
MONOCYTES_67
282.2
MONOCYTES_68
280.3
MONOCYTES_69
278.8
MONOCYTES_70
277.7
MONOCYTES_71
275.2
MONOCYTES_72
268.1
MONOCYTES_73
266.3
MONOCYTES_74
265.7
MONOCYTES_75
264.0
MONOCYTES_76
263.9
MONOCYTES_77
263.2
MONOCYTES_78
262.6
MONOCYTES_79
262.5
MONOCYTES_80
259.5
MONOCYTES_81
253.9
MONOCYTES_82
252.3
MONOCYTES_83
251.7
MONOCYTES_84
251.1
MONOCYTES_85
250.6
MONOCYTES_86
249.7
MONOCYTES_87
243.1
MONOCYTES_88
241.6
MONOCYTES_89
235.8
MONOCYTES_90
234.0
MONOCYTES_91
214.5
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Non-classical monocyte TPM: 615.4
Samples: 90
Max TPM: 971.7
Min TPM: 382.1
M2_1
971.7
M2_2
942.3
M2_3
896.2
M2_4
859.9
M2_5
828.9
M2_6
817.4
M2_7
791.6
M2_8
777.6
M2_9
755.3
M2_10
751.1
M2_11
748.2
M2_12
722.3
M2_13
721.6
M2_14
704.6
M2_15
701.8
M2_16
701.1
M2_17
698.0
M2_18
696.9
M2_19
694.8
M2_20
662.5
M2_21
658.6
M2_22
658.6
M2_23
654.3
M2_24
649.2
M2_25
648.9
M2_26
647.9
M2_27
647.0
M2_28
646.4
M2_29
645.6
M2_30
642.9
M2_31
639.3
M2_32
638.9
M2_33
637.0
M2_34
636.5
M2_35
627.9
M2_36
623.4
M2_37
623.1
M2_38
622.6
M2_39
619.7
M2_40
618.5
M2_41
616.0
M2_42
613.2
M2_43
609.9
M2_44
608.4
M2_45
606.6
M2_46
603.8
M2_47
591.4
M2_48
591.3
M2_49
590.4
M2_50
590.2
M2_51
585.8
M2_52
585.0
M2_53
582.3
M2_54
581.1
M2_55
579.9
M2_56
579.1
M2_57
575.2
M2_58
574.8
M2_59
573.2
M2_60
572.5
M2_61
565.6
M2_62
563.3
M2_63
563.3
M2_64
561.5
M2_65
557.3
M2_66
553.5
M2_67
550.3
M2_68
545.6
M2_69
544.6
M2_70
544.5
M2_71
542.6
M2_72
532.2
M2_73
522.0
M2_74
519.5
M2_75
513.4
M2_76
512.4
M2_77
496.9
M2_78
495.6
M2_79
493.4
M2_80
492.9
M2_81
492.0
M2_82
491.6
M2_83
490.3
M2_84
484.1
M2_85
478.9
M2_86
475.3
M2_87
467.8
M2_88
467.2
M2_89
446.4
M2_90
382.1
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