A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.7
nTPM
Monaco:
55.4
nTPM
Schmiedel:
69.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.7
HPA sample
nTPM
NK-cell nTPM: 4.7
Samples: 6
Max nTPM: 11.7
Min nTPM: 2.3
P10809_1013
4.2
P10809_1033
3.2
P10809_1052
3.0
P10809_1071
3.7
P10809_1093
11.7
P10809_1103
2.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.4
Monaco sample
nTPM
NK-cell nTPM: 55.4
Samples: 4
Max nTPM: 86.3
Min nTPM: 37.0
RHH5316_R3683
86.3
RHH5224_R3596
41.8
RHH5253_R3625
37.0
RHH5282_R3654
56.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.8
Schmiedel sample id
TPM
NK-cell TPM: 69.8
Samples: 90
Max TPM: 175.8
Min TPM: 26.8
NK_1
175.8
NK_2
141.0
NK_3
132.7
NK_4
132.5
NK_5
123.9
NK_6
118.1
NK_7
115.4
NK_8
106.8
NK_9
106.2
NK_10
101.6
NK_11
97.5
NK_12
96.9
NK_13
94.5
NK_14
94.4
NK_15
94.3
NK_16
94.1
NK_17
90.9
NK_18
87.6
NK_19
86.9
NK_20
85.2
NK_21
84.3
NK_22
83.8
NK_23
82.2
NK_24
82.0
NK_25
78.8
NK_26
78.3
NK_27
75.2
NK_28
73.4
NK_29
73.3
NK_30
73.2
NK_31
71.8
NK_32
70.2
NK_33
70.0
NK_34
69.5
NK_35
68.7
NK_36
68.6
NK_37
68.2
NK_38
67.9
NK_39
67.2
NK_40
67.1
NK_41
66.6
NK_42
66.1
NK_43
65.9
NK_44
64.6
NK_45
64.3
NK_46
63.5
NK_47
63.1
NK_48
63.1
NK_49
62.7
NK_50
62.2
NK_51
62.0
NK_52
61.6
NK_53
61.0
NK_54
60.0
NK_55
59.9
NK_56
59.2
NK_57
59.1
NK_58
58.5
NK_59
57.2
NK_60
57.2
NK_61
56.4
NK_62
55.7
NK_63
55.6
NK_64
55.3
NK_65
54.8
NK_66
53.7
NK_67
53.6
NK_68
52.7
NK_69
52.6
NK_70
52.4
NK_71
52.1
NK_72
51.5
NK_73
50.1
NK_74
49.8
NK_75
49.2
NK_76
48.5
NK_77
47.1
NK_78
46.0
NK_79
45.8
NK_80
45.3
NK_81
44.4
NK_82
44.3
NK_83
43.3
NK_84
39.2
NK_85
37.8
NK_86
35.0
NK_87
34.7
NK_88
33.9
NK_89
28.0
NK_90
26.8
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