A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.2
nTPM
Monaco:
36.0
nTPM
Schmiedel:
20.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.2
HPA sample
nTPM
Classical monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.6
P10809_1003
0.7
P10809_1020
0.6
P10809_1039
0.6
P10809_1058
0.8
P10809_1080
0.7
P10809_1107
1.1
Intermediate monocyte nTPM: 1.2
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.5
P10809_1004
0.7
P10809_1023
0.5
P10809_1042
1.0
P10809_1061
1.6
P10809_1081
1.8
P10809_1108
1.6
Non-classical monocyte nTPM: 0.3
Samples: 5
Max nTPM: 0.5
Min nTPM: 0.1
P10809_1005
0.2
P10809_1053
0.4
P10809_1072
0.1
P10809_1082
0.5
P10809_1109
0.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.0
Monaco sample
nTPM
Classical monocyte nTPM: 36.0
Samples: 4
Max nTPM: 103.5
Min nTPM: 4.3
RHH5313_R3680
4.3
RHH5221_R3593
103.5
RHH5250_R3622
18.3
RHH5279_R3651
17.9
Intermediate monocyte nTPM: 30.5
Samples: 4
Max nTPM: 80.7
Min nTPM: 9.6
RHH5314_R3681
11.0
RHH5222_R3594
80.7
RHH5251_R3623
20.7
RHH5280_R3652
9.6
Non-classical monocyte nTPM: 21.1
Samples: 4
Max nTPM: 66.1
Min nTPM: 2.6
RHH5315_R3682
4.3
RHH5223_R3595
66.1
RHH5252_R3624
11.5
RHH5281_R3653
2.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.1
Schmiedel sample id
TPM
Classical monocyte TPM: 20.1
Samples: 91
Max TPM: 53.0
Min TPM: 6.1
MONOCYTES_1
53.0
MONOCYTES_2
45.1
MONOCYTES_3
41.6
MONOCYTES_4
36.4
MONOCYTES_5
36.1
MONOCYTES_6
34.2
MONOCYTES_7
33.8
MONOCYTES_8
33.5
MONOCYTES_9
32.9
MONOCYTES_10
32.8
MONOCYTES_11
32.6
MONOCYTES_12
32.3
MONOCYTES_13
29.0
MONOCYTES_14
28.9
MONOCYTES_15
28.9
MONOCYTES_16
28.7
MONOCYTES_17
28.7
MONOCYTES_18
28.6
MONOCYTES_19
28.0
MONOCYTES_20
27.4
MONOCYTES_21
27.2
MONOCYTES_22
26.1
MONOCYTES_23
25.7
MONOCYTES_24
25.7
MONOCYTES_25
25.7
MONOCYTES_26
25.5
MONOCYTES_27
25.3
MONOCYTES_28
24.5
MONOCYTES_29
24.2
MONOCYTES_30
22.4
MONOCYTES_31
22.1
MONOCYTES_32
21.4
MONOCYTES_33
21.4
MONOCYTES_34
21.1
MONOCYTES_35
21.1
MONOCYTES_36
20.8
MONOCYTES_37
20.3
MONOCYTES_38
20.3
MONOCYTES_39
20.1
MONOCYTES_40
20.0
MONOCYTES_41
19.7
MONOCYTES_42
19.4
MONOCYTES_43
19.4
MONOCYTES_44
19.2
MONOCYTES_45
19.1
MONOCYTES_46
18.8
MONOCYTES_47
18.6
MONOCYTES_48
18.5
MONOCYTES_49
17.8
MONOCYTES_50
17.1
MONOCYTES_51
17.1
MONOCYTES_52
16.4
MONOCYTES_53
16.4
MONOCYTES_54
16.3
MONOCYTES_55
16.2
MONOCYTES_56
15.9
MONOCYTES_57
15.8
MONOCYTES_58
15.7
MONOCYTES_59
15.6
MONOCYTES_60
15.4
MONOCYTES_61
15.4
MONOCYTES_62
15.0
MONOCYTES_63
14.7
MONOCYTES_64
14.6
MONOCYTES_65
14.6
MONOCYTES_66
14.5
MONOCYTES_67
14.2
MONOCYTES_68
14.1
MONOCYTES_69
14.0
MONOCYTES_70
14.0
MONOCYTES_71
13.4
MONOCYTES_72
12.4
MONOCYTES_73
11.8
MONOCYTES_74
11.8
MONOCYTES_75
11.8
MONOCYTES_76
11.4
MONOCYTES_77
11.2
MONOCYTES_78
11.1
MONOCYTES_79
11.1
MONOCYTES_80
11.0
MONOCYTES_81
10.3
MONOCYTES_82
10.3
MONOCYTES_83
9.4
MONOCYTES_84
8.2
MONOCYTES_85
8.0
MONOCYTES_86
7.7
MONOCYTES_87
7.2
MONOCYTES_88
6.9
MONOCYTES_89
6.7
MONOCYTES_90
6.6
MONOCYTES_91
6.1
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Non-classical monocyte TPM: 1.1
Samples: 90
Max TPM: 4.6
Min TPM: 0.2
M2_1
4.6
M2_2
4.2
M2_3
3.8
M2_4
2.3
M2_5
2.1
M2_6
2.0
M2_7
2.0
M2_8
1.9
M2_9
1.9
M2_10
1.8
M2_11
1.7
M2_12
1.7
M2_13
1.6
M2_14
1.6
M2_15
1.4
M2_16
1.4
M2_17
1.4
M2_18
1.4
M2_19
1.3
M2_20
1.3
M2_21
1.3
M2_22
1.3
M2_23
1.2
M2_24
1.2
M2_25
1.1
M2_26
1.1
M2_27
1.1
M2_28
1.1
M2_29
1.1
M2_30
1.0
M2_31
1.0
M2_32
1.0
M2_33
1.0
M2_34
1.0
M2_35
1.0
M2_36
1.0
M2_37
1.0
M2_38
1.0
M2_39
1.0
M2_40
1.0
M2_41
1.0
M2_42
0.9
M2_43
0.9
M2_44
0.9
M2_45
0.9
M2_46
0.9
M2_47
0.9
M2_48
0.8
M2_49
0.8
M2_50
0.8
M2_51
0.8
M2_52
0.8
M2_53
0.8
M2_54
0.8
M2_55
0.8
M2_56
0.8
M2_57
0.8
M2_58
0.7
M2_59
0.7
M2_60
0.7
M2_61
0.7
M2_62
0.7
M2_63
0.7
M2_64
0.7
M2_65
0.7
M2_66
0.7
M2_67
0.7
M2_68
0.7
M2_69
0.6
M2_70
0.6
M2_71
0.6
M2_72
0.6
M2_73
0.6
M2_74
0.6
M2_75
0.6
M2_76
0.6
M2_77
0.5
M2_78
0.5
M2_79
0.5
M2_80
0.4
M2_81
0.4
M2_82
0.4
M2_83
0.4
M2_84
0.4
M2_85
0.4
M2_86
0.4
M2_87
0.3
M2_88
0.3
M2_89
0.3
M2_90
0.2
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