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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:108.1 nTPM
HPA Brain:76.7 nTPM
GTEx:108.1 nTPM
FANTOM5:88.8 Scaled Tags Per Million
Pig:82.5 nTPM
Mouse:88.4 nTPM
Allen mouse:3.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.7
Sample id Sample description nTPM
Amygdala
nTPM: 74.9
1987 Female, age 91, left hemisphere 83.2
2814 Male, age 76, right hemisphere 83.1
2514 Male, age 75, right hemisphere 73.3
2517 Female, age 94, left hemisphere 71.2
2695 Female, age 67, right hemisphere 63.7
Basal amygdala
nTPM: 74.4
2110 Male, age 80, left hemisphere 89.3
2685 Female, age 94, left hemisphere 80.1
2243 Female, age 91, right hemisphere 79.9
1955 Male, age 76, both hemispheres 74.0
2609 Male, age 75, right hemisphere 65.1
2827 Female, age 67, right hemisphere 58.2
Central amygdala
nTPM: 72.9
2239 Male, age 80, left hemisphere 85.0
1905 Male, age 76, both hemispheres 72.7
2701 Female, age 91, right hemisphere 72.0
2826 Female, age 94, left hemisphere 70.0
2515 Male, age 75, right hemisphere 64.8
Corticomedial amygdala
nTPM: 76.7
2829 Male, age 80, left hemisphere 96.0
2429 Female, age 94, left hemisphere 89.3
2240 Male, age 76, both hemispheres 73.0
2242 Female, age 91, right hemisphere 72.3
2428 Male, age 75, right hemisphere 68.9
2535 Female, age 67, right hemisphere 60.4
Lateral amygdala
nTPM: 72.4
1883 Male, age 76, both hemispheres 81.6
2534 Female, age 94, left hemisphere 80.1
2516 Male, age 75, right hemisphere 74.6
2256 Male, age 80, left hemisphere 70.0
2255 Female, age 91, right hemisphere 68.3
2830 Female, age 67, right hemisphere 60.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 108.1
Samples: 181

Max nTPM: 254.5
Min nTPM: 54.0
Std nTPM: 34.5
Median nTPM: 102.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 254.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 236.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 215.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 212.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 187.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 181.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 177.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 176.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 169.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 167.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 166.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 162.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 161.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 160.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 159.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 155.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 149.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 149.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 149.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 148.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 148.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 147.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 145.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 143.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 142.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 140.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 140.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 139.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 138.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 138.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 138.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 138.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 137.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 137.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 136.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 135.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 135.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 134.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 134.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 134.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 133.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 130.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 130.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 130.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 129.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 128.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 128.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 127.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 126.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 126.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 126.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 123.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 122.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 121.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 120.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 118.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 118.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 118.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 118.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 117.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 117.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 116.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 115.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 115.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 115.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 114.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 114.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 114.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 114.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 114.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 113.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 113.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 112.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 110.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 110.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 109.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 109.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 108.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 106.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 106.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 106.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 106.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 105.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 105.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 105.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 104.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 104.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 103.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 102.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 102.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 102.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 102.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 101.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 100.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 99.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 98.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 98.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 98.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 98.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 98.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 97.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 97.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 97.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 97.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 97.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 97.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 96.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 96.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 95.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 94.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 94.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 94.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 93.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 93.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 92.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 92.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 92.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 91.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 91.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 90.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 90.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 90.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 89.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 89.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 88.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 85.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 85.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 85.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 83.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 83.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 82.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 81.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 81.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 81.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 80.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 80.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 80.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 79.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 79.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 78.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 77.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 77.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 77.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 76.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 76.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 76.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 76.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 74.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 74.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 74.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 74.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 74.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 74.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 73.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 73.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 73.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 72.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 72.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 72.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 72.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 71.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 70.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 70.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 70.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 70.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 70.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 70.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 69.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 68.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 67.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 67.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 66.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 66.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 64.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 64.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 63.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 59.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 59.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 56.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 54.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 54.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

88.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 88.8
FF:10151-102I7 76 years, female 88.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.5
Pig sample Sample description nTPM
Amygdala
nTPM: 82.5
Samples: 4

Max nTPM: 111.3
Min nTPM: 69.9
Sample A Female 111.3
Sample B Female 74.6
Sample C Male 74.2
Sample D Male 69.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 88.4
Samples: 4

Max nTPM: 96.7
Min nTPM: 82.2
Sample A Male 96.7
Sample B Male 88.4
Sample C Female 86.4
Sample D Female 82.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.6
71232582 Antisense, RP_050412_01_E11, Mouse strain C57BL/6J (56 days, male) 3.6

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