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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
205.7
Sample id
Sample description
nTPM
Amygdala nTPM: 146.7
2814
Male, age 76, right hemisphere
189.2
1987
Female, age 91, left hemisphere
169.6
2517
Female, age 94, left hemisphere
153.8
2514
Male, age 75, right hemisphere
112.5
2695
Female, age 67, right hemisphere
108.6
Basal amygdala nTPM: 196.8
2685
Female, age 94, left hemisphere
268.2
2243
Female, age 91, right hemisphere
228.4
2609
Male, age 75, right hemisphere
195.4
1955
Male, age 76, both hemispheres
178.7
2110
Male, age 80, left hemisphere
164.8
2827
Female, age 67, right hemisphere
145.6
Central amygdala nTPM: 169.3
2826
Female, age 94, left hemisphere
198.1
1905
Male, age 76, both hemispheres
192.0
2239
Male, age 80, left hemisphere
169.1
2701
Female, age 91, right hemisphere
143.8
2515
Male, age 75, right hemisphere
143.5
Corticomedial amygdala nTPM: 205.7
2429
Female, age 94, left hemisphere
248.9
2242
Female, age 91, right hemisphere
225.4
2535
Female, age 67, right hemisphere
221.9
2829
Male, age 80, left hemisphere
202.3
2240
Male, age 76, both hemispheres
178.6
2428
Male, age 75, right hemisphere
157.5
Lateral amygdala nTPM: 154.7
2534
Female, age 94, left hemisphere
232.7
1883
Male, age 76, both hemispheres
182.1
2255
Female, age 91, right hemisphere
160.8
2256
Male, age 80, left hemisphere
133.7
2516
Male, age 75, right hemisphere
133.6
2830
Female, age 67, right hemisphere
85.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 39.7
Samples: 181
Max nTPM: 90.0
Min nTPM: 10.0
Std nTPM: 16.5
Median nTPM: 38.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
90.0
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
86.5
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
84.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
81.9
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
79.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
77.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
77.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
72.9
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
71.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
70.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
70.7
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
70.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
69.8
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
68.8
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
68.3
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
65.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
65.8
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
63.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
62.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
59.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
59.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
59.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
59.4
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
59.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
59.1
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
58.5
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
58.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
57.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
57.2
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
57.0
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
57.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
56.7
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
56.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
55.2
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
55.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
54.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
52.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
51.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
50.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
50.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
50.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
49.2
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
49.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
48.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
48.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
48.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
48.8
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
48.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
48.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
48.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
48.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
47.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
47.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
46.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
46.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
45.1
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
44.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
44.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
43.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
43.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
43.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
43.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
43.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
43.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
43.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
42.8
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
42.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
42.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
42.0
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
41.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
41.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
41.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
41.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
41.5
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
41.3
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
40.7
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
40.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
40.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
40.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
40.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
40.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
40.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
40.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
39.2
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
39.2
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
39.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
38.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
38.1
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
38.1
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
38.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
38.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
38.0
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
37.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
37.3
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
35.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
35.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
35.6
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
35.5
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
35.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
35.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
35.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
34.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
34.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
34.1
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
34.1
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
33.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
33.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
32.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
32.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
32.2
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
31.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
31.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
31.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
31.4
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
31.4
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
31.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
31.2
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
31.1
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
31.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
30.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
30.3
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
30.3
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
30.1
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
30.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
30.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
29.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
29.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
29.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
29.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
29.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
29.0
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
28.5
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
28.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
28.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
28.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
27.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
27.4
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
27.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
27.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
27.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
26.5
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
26.4
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
26.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
25.9
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
25.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
25.4
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
25.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
24.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
24.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
24.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
24.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
24.1
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
24.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
24.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
23.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
23.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
23.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
22.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
22.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
21.6
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
21.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
21.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
21.0
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
20.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
20.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
19.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
19.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
19.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
18.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
17.0
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
17.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
16.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
16.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
14.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
14.8
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
14.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
14.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
14.0
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
13.9
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
12.7
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
10.0
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
103.9
Pig sample
Sample description
nTPM
Amygdala nTPM: 103.9
Samples: 4
Max nTPM: 153.6
Min nTPM: 66.7
Sample A
Female
153.6
Sample B
Female
66.7
Sample C
Male
78.2
Sample D
Male
117.2
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
295.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 295.5
Samples: 4
Max nTPM: 313.3
Min nTPM: 283.8
Sample A
Male
298.4
Sample B
Male
283.8
Sample C
Female
313.3
Sample D
Female
286.4
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
