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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
413.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 336.7
2148
Female, age 91, left hemisphere
483.3
2621
Female, age 67, right hemisphere
384.6
1898
Male, age 80, left hemisphere
362.0
1855
Male, age 76, left hemisphere
299.6
1911
Female, age 85, right hemisphere
282.6
2529
Female, age 94, left hemisphere
208.4
Dentate gyrus nTPM: 388.3
1927
Female, age 91, both hemispheres
576.5
2530
Female, age 94, left hemisphere
428.2
2531
Female, age 67, both hemispheres
418.1
2010
Male, age 76, both hemispheres
342.0
2528
Male, age 74, both hemispheres
309.4
2246
Female, age 85, both hemispheres
255.9
Entorhinal gyrus nTPM: 220.5
2613
Female, age 94, left hemisphere
313.6
2686
Male, age 75, right hemisphere
235.7
2764
Male, age 80, right hemisphere
226.7
1938
Female, age 85, left hemisphere
207.3
1787
Male, age 76, left hemisphere
186.1
2117
Female, age 91, right hemisphere
153.5
Hippocampus, CA1 nTPM: 413.4
2749
Male, age 80, left hemisphere
808.3
1873
Female, age 85, both hemispheres
427.0
2045
Male, age 76, both hemispheres
350.2
2527
Male, age 74, both hemispheres
310.0
2082
Female, age 91, right hemisphere
171.3
Hippocampus, CA2 nTPM: 287.3
1963
Male, age 80, left hemisphere
502.7
1892
Male, age 76, both hemispheres
379.3
2437
Female, age 94, left hemisphere
287.0
2249
Male, age 74, both hemispheres
221.2
2113
Female, age 91, right hemisphere
169.9
1940
Female, age 85, left hemisphere
164.0
Hippocampus, CA3 nTPM: 394.4
2137
Male, age 80, left hemisphere
589.1
2620
Female, age 94, left hemisphere
577.5
2861
Female, age 67, both hemispheres
455.4
1867
Male, age 76, both hemispheres
302.1
2436
Male, age 74, both hemispheres
221.4
1891
Female, age 85, both hemispheres
220.9
Parahippocampal cortex nTPM: 211.3
2245
Female, age 91, both hemispheres
309.4
1990
Female, age 91, right hemisphere
234.8
2693
Female, age 94, both hemispheres
233.2
2622
Female, age 67, right hemisphere
229.3
1850
Male, age 80, both hemispheres
210.2
2692
Male, age 74, both hemispheres
198.3
1933
Female, age 85, both hemispheres
184.1
2532
Female, age 72, left hemisphere
175.5
2018
Male, age 76, both hemispheres
169.8
2250
Female, age 67, right hemisphere
168.4
Perirhinal gyrus nTPM: 222.6
1847
Female, age 91, left hemisphere
299.5
1794
Male, age 80, right hemisphere
228.6
2521
Female, age 94, right hemisphere
200.8
1841
Female, age 85, right hemisphere
195.6
2848
Male, age 76, right hemisphere
188.5
Subiculum nTPM: 229.8
1901
Male, age 80, both hemispheres
294.5
2438
Female, age 94, left hemisphere
252.9
2729
Female, age 91, right hemisphere
245.8
1977
Female, age 85, both hemispheres
201.7
2042
Male, age 76, both hemispheres
201.7
2619
Male, age 74, both hemispheres
182.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
77.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 77.4
Samples: 255
Max nTPM: 307.1
Min nTPM: 2.5
Std nTPM: 48.8
Median nTPM: 68.4
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
307.1
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
230.7
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
205.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
186.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
182.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
180.9
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
179.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
179.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
178.4
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
177.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
175.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
173.5
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
171.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
167.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
165.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
163.0
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
160.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
158.5
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
156.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
155.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
151.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
150.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
147.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
146.4
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
144.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
140.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
140.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
140.1
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
138.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
138.6
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
138.5
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
138.4
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
138.2
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
136.8
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
135.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
133.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
132.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
132.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
132.1
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
128.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
126.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
124.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
124.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
123.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
123.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
122.0
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
121.6
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
119.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
119.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
118.7
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
118.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
118.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
117.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
117.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
116.7
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
112.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
112.4
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
112.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
111.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
110.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
108.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
107.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
106.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
106.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
105.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
104.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
104.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
104.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
104.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
104.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
104.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
103.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
102.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
101.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
101.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
100.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
99.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
99.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
98.3
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
98.2
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
97.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
97.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
96.1
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
95.9
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
95.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
93.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
93.0
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
92.3
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
92.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
91.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
91.0
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
89.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
89.6
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
89.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
89.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
87.9
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
87.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
87.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
86.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
85.0
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
84.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
82.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
81.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
81.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
80.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
80.0
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
79.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
79.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
79.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
79.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
78.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
78.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
78.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
77.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
76.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
75.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
75.5
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
74.6
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
73.7
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
73.5
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
72.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
72.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
72.3
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
70.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
69.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
68.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
68.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
68.4
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
68.4
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
67.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
67.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
67.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
64.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
64.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
62.8
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
62.6
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
62.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
61.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
61.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
61.4
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
60.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
60.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
60.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
59.5
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
59.5
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
59.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
59.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
58.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
58.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
58.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
58.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
58.2
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
58.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
57.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
57.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
57.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
57.1
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
57.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
56.6
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
56.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
55.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
54.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
53.8
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
53.6
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
53.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
53.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
53.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
51.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
51.2
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
50.6
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
50.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
50.1
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
49.9
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
49.5
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
49.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
48.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
47.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
47.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
47.1
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
46.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
46.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
45.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
44.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
44.8
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
43.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
42.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
41.9
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
41.8
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
41.5
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
39.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
39.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
39.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
39.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
39.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
38.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
37.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
37.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
36.7
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
36.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
35.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
35.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
35.4
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
34.3
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
34.2
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
33.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
33.3
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
32.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
32.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
32.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
32.6
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
32.2
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
31.5
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
31.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
30.4
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
29.9
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
29.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
27.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
27.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
26.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
26.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
26.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
25.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
25.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
24.1
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
24.1
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
23.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
23.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
22.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
21.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
20.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
20.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
19.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
19.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
18.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
16.3
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
15.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
12.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
12.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
12.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
11.6
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
10.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
10.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
9.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
9.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
9.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
8.0
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
7.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
7.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
7.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
7.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
7.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
6.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
6.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
3.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
210.7
Pig sample
Sample description
nTPM
Subiculum nTPM: 130.8
Samples: 4
Max nTPM: 175.8
Min nTPM: 109.0
Sample A
Female
175.8
Sample B
Female
111.4
Sample C
Male
126.9
Sample D
Male
109.0
Dorsal hippocampus nTPM: 210.7
Samples: 4
Max nTPM: 270.3
Min nTPM: 122.3
Sample A
Female
270.3
Sample B
Female
235.8
Sample C
Male
122.3
Sample D
Male
214.5
Entorhinal cortex nTPM: 167.8
Samples: 4
Max nTPM: 205.2
Min nTPM: 150.6
Sample A
Female
205.2
Sample B
Female
154.4
Sample C
Male
150.6
Sample D
Male
160.9
Ventral hippocampus nTPM: 166.0
Samples: 4
Max nTPM: 222.5
Min nTPM: 101.9
Sample A
Female
166.8
Sample B
Female
101.9
Sample C
Male
172.6
Sample D
Male
222.5
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
484.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 266.6
Samples: 4
Max nTPM: 279.0
Min nTPM: 248.4
Sample A
Male
279.0
Sample B
Male
248.4
Sample C
Female
272.9
Sample D
Female
266.0
Hippocampal formation nTPM: 484.6
Samples: 4
Max nTPM: 574.4
Min nTPM: 397.5
Sample A
Male
397.5
Sample B
Male
539.1
Sample C
Female
574.4
Sample D
Female
427.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.