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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
108.1
nTPM
HPA Brain:
590.7
nTPM
GTEx:
108.1
nTPM
FANTOM5:
356.7
Scaled Tags Per Million
Pig:
155.9
nTPM
Mouse:
83.9
nTPM
Allen mouse:
7.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
590.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 484.1
2586
Male, age 75, left hemisphere
646.1
1830
Male, age 51, unknown
543.6
1833
Male, age 53, unknown
511.1
2666
Male, age 74, left hemisphere
492.4
2019
Male, age 18, unknown
488.4
2828
Female, age 72, unknown
481.4
1870
Female, age 42, unknown
455.5
2411
Female, age 72, unknown
453.6
2219
Male, age 76, both hemispheres
394.9
1827
Male, age 72, unknown
373.9
Dorsal raphe nucleus nTPM: 385.9
2750
Male, age 76, both hemispheres
491.1
1828
Male, age 53, unknown
397.3
2016
Female, age 72, unknown
387.4
2047
Male, age 72, unknown
376.2
2298
Female, age 72, unknown
277.6
Inferior colliculus nTPM: 351.8
2849
Male, age 72, unknown
381.3
1890
Male, age 53, unknown
379.3
1848
Female, age 42, unknown
363.6
2097
Female, age 72, unknown
282.9
Median raphe nucleus nTPM: 415.2
2220
Male, age 76, midline
415.2
Periaquaductal grey, anterior nTPM: 365.6
2502
Female, age 75, unknown
404.8
1947
Male, age 18, unknown
365.8
1795
Male, age 51, unknown
326.2
Periaquaductal grey, dorsal nTPM: 314.7
2464
Female, age 72, unknown
358.7
2850
Male, age 76, both hemispheres
322.7
1831
Male, age 72, unknown
315.9
1840
Male, age 53, unknown
261.5
Periaquaductal grey, lateral nTPM: 341.2
2053
Male, age 18, unknown
345.5
2272
Male, age 74, both hemispheres
340.6
2140
Male, age 76, both hemispheres
337.4
Pretectal area nTPM: 351.4
2407
Male, age 75, both hemispheres
444.5
1815
Male, age 53, unknown
411.2
2316
Male, age 76, right hemisphere
393.8
1817
Female, age 42, unknown
379.8
2007
Male, age 72, unknown
379.3
2825
Male, age 18, unknown
360.0
1816
Male, age 51, unknown
320.1
1944
Female, age 72, unknown
307.9
2273
Male, age 74, both hemispheres
299.8
2224
Female, age 72, unknown
297.8
2667
Female, age 75, unknown
271.0
Red nucleus nTPM: 590.7
2503
Female, age 72, unknown
680.8
1865
Male, age 51, unknown
663.2
2588
Male, age 74, left hemisphere
643.2
1904
Male, age 53, unknown
637.8
2227
Male, age 72, unknown
634.8
2769
Male, age 72, unknown
619.4
2785
Male, age 18, unknown
574.5
2823
Male, age 76, right hemisphere
556.8
1954
Female, age 42, unknown
546.8
2584
Male, age 75, left hemisphere
539.0
2725
Female, age 75, unknown
507.1
1821
Female, age 72, unknown
485.3
Substantia nigra nTPM: 448.3
2583
Male, age 75, right hemisphere
511.4
2590
Female, age 75, unknown
502.3
2699
Male, age 18, unknown
486.4
2665
Male, age 74, both hemispheres
479.3
1851
Male, age 51, unknown
472.1
1941
Male, age 53, unknown
431.0
2409
Female, age 72, unknown
423.8
1916
Female, age 42, unknown
420.0
1889
Female, age 72, unknown
405.4
2241
Male, age 72, unknown
351.2
Superior colliculus nTPM: 419.3
1913
Female, age 42, unknown
504.2
1995
Male, age 72, unknown
495.8
2668
Female, age 75, unknown
491.6
2664
Male, age 75, both hemispheres
442.6
2587
Male, age 74, left hemisphere
439.7
1839
Male, age 51, unknown
410.2
2261
Male, age 18, unknown
361.5
1796
Male, age 53, unknown
360.7
1895
Male, age 76, right hemisphere
360.1
2087
Female, age 72, unknown
327.0
Ventral tegmental area nTPM: 463.4
2223
Female, age 72, unknown
610.4
2410
Female, age 72, unknown
498.9
2218
Male, age 76, both hemispheres
449.4
2021
Male, age 53, unknown
417.8
1942
Male, age 51, unknown
413.3
1915
Female, age 42, unknown
390.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
108.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 108.1
Samples: 139
Max nTPM: 245.5
Min nTPM: 35.3
Std nTPM: 46.4
Median nTPM: 99.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
245.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
241.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
233.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
217.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
212.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
209.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
204.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
202.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
200.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
189.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
186.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
179.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
178.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
165.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
163.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
163.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
162.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
159.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
157.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
156.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
156.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
155.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
155.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
154.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
152.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
152.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
148.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
145.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
145.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
143.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
142.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
140.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
138.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
138.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
137.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
136.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
135.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
133.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
133.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
131.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
129.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
127.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
126.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
125.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
124.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
123.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
120.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
119.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
119.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
117.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
117.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
116.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
116.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
116.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
116.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
115.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
115.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
114.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
113.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
112.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
112.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
110.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
109.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
107.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
106.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
105.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
102.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
102.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
100.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
99.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
98.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
98.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
98.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
98.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
97.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
97.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
95.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
95.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
95.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
94.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
89.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
86.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
85.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
85.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
85.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
84.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
83.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
82.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
81.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
80.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
80.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
79.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
78.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
77.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
77.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
77.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
77.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
76.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
76.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
76.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
74.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
73.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
72.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
71.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
69.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
68.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
67.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
67.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
66.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
65.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
65.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
64.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
64.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
64.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
63.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
63.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
61.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
61.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
61.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
60.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
60.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
60.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
60.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
59.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
56.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
54.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
53.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
51.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
51.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
50.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
49.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
48.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
48.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
47.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
45.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
43.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
42.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
40.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
35.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
83.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 84.0
Samples: 4
Max nTPM: 89.4
Min nTPM: 71.5
Sample A
Male
71.5
Sample B
Male
89.4
Sample C
Female
89.2
Sample D
Female
85.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.